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SCNpilot_expt_1000_bf_scaffold_3575_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3575_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..271)
DNA (270bp) protein (90aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIF5_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67078.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_2
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(856..984)
DNA (129bp) protein (43aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_1000_bf_scaffold_3575_curated_3
RBG_16_Elusimicrobia_66_12_curated, Elusimicrobia, Bacteria

Not on your lists

comp(1257..1547)
DNA (291bp) protein (97aa)
Tax=RBG_16_Elusimicrobia_66_12_curated
Uncharacterized protein n=1 Tax=Pythium ultimum RepID=K3WQ27_PYTUL
SCNpilot_expt_1000_bf_scaffold_3575_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1895..2206
DNA (312bp) protein (104aa)
septum formation initiator
Septum formation initiator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIF3_9SPHN
Septum formation initiator {ECO:0000313|EMBL:BAK67076.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_5
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(2261..2989)
DNA (729bp) protein (243aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ72698.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_6
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3275..3403
DNA (129bp) protein (43aa)
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=1 Tax=Rhodobacter sp. SW2 RepID=C8S3T7_9RHOB
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_7
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3394..3975)
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ51483.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_8
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4339..4776
DNA (438bp) protein (146aa)
Pyruvate dehydrogenase E1 component beta subunit {ECO:0000313|EMBL:BAQ17576.1}; EC=1.2.4.1 {ECO:0000313|EMBL:BAQ17576.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
transketolase; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
pyruvate dehydrogenase subunit beta n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003136DE2
SCNpilot_expt_1000_bf_scaffold_3575_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4782..6110
DNA (1329bp) protein (443aa)
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCI2_9BRAD rbh
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
branched-chain alpha-keto acid dehydrogenase E2; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
SCNpilot_expt_1000_bf_scaffold_3575_curated_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6121..8298
DNA (2178bp) protein (726aa)
Dihydrolipoyl dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KK27_9PROT rbh
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
SCNpilot_expt_1000_bf_scaffold_3575_curated_11
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8311..8907
DNA (597bp) protein (199aa)
negative transcriptional regulator; K07734 transcriptional regulator
Probable negative transcriptional regulator n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K8B5_AZOSB
Probable negative transcriptional regulator {ECO:0000313|EMBL:CAL95070.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8904..9803
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003693AD0
Uncharacterized protein {ECO:0000313|EMBL:GAN77396.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
cytochrome c oxidase caa3-type, assembly factor CtaG-like protein; K02351 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_3575_curated_13
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9894..10385)
DNA (492bp) protein (164aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QWF9_ISOPI
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_14
unknown

Not on your lists

10442..10978
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3575_curated_15
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10975..12051
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EBC710
glycine oxidase ThiO; K03153 glycine oxidase [EC:1.4.3.19]
Glycine oxidase ThiO {ECO:0000313|EMBL:EGO96945.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_16
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12055..12465
DNA (411bp) protein (137aa)
histidine triad (HIT) protein
Histidine triad (HIT) protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II17_METNO
Histidine triad (HIT) protein {ECO:0000313|EMBL:ACL56055.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_17
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12489..13400
DNA (912bp) protein (304aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T763_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:ABZ72701.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_18
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(13397..13900)
DNA (504bp) protein (168aa)
Histidine phosphotransferase {ECO:0000313|EMBL:KIF12326.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI000374F522
histidine phosphotransferase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3575_curated_19
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13904..14410)
DNA (507bp) protein (169aa)
Chemotaxis protein CheYIII n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HN16_9PROT
Chemotaxis protein CheYIII {ECO:0000313|EMBL:EKV31693.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_3575_curated_20
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14520..14894)
DNA (375bp) protein (125aa)
ppnK; inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8G7_PHEZH
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_21
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15438..16106)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B468DA
Uncharacterized protein {ECO:0000313|EMBL:ENZ81797.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3575_curated_22
unknown

Not on your lists

16189..16488
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3575_curated_23
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16583..18088
DNA (1506bp) protein (502aa)
Glycerol kinase n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WAH0_9GAMM rbh
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] rbh
SCNpilot_expt_1000_bf_scaffold_3575_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18138..19175
DNA (1038bp) protein (346aa)
glycosyl transferase family protein rbh
Glycosyl transferase, family 2 n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ISK7_RHOP2 rbh
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABD08803.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_3575_curated_25
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19179..19973
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YER1_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:EAS48834.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3575_curated_26
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21079..21324
DNA (246bp) protein (82aa)
Sel1 domain protein repeat-containing protein (Fragment) n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWB2_METTR
Peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:GAK45590.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Sel1 domain-containing protein; K13582 localization factor PodJL
Displaying 26 items

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