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SCNpilot_expt_1000_bf_scaffold_6784_curated_1

Organism: scnpilot_dereplicated_Alphaproteobacteria_4

partial RP 35 / 55 BSCG 32 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: 3..596

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.5
  • Coverage: 197.0
  • Bit_score: 263
  • Evalue 2.20e-67
Transcription-repair-coupling factor n=2 Tax=Labrenzia RepID=U7GL70_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 197.0
  • Bit_score: 249
  • Evalue 2.40e-63
Mfd, transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 62.8
  • Coverage: 196.0
  • Bit_score: 248
  • Evalue 1.30e-63

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Taxonomy

Methyloceanibacter caenitepidi → Methyloceanibacter → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 594
GATATCCGCGGCGCGGGCAACCTGTTGGGCGAGGAACAGTCCGGCCATGTCCGCGAGGTGGGCATCGAGCTCTATCAGGAGATGCTGGAGGAAGCGGTCAGCGGCCTGAAGGAGGGCGGCGAGGCCGATGTCACCGACCAGTGGTCGCCCACCATCAATCTGGGCGCCTCGGTGCTGATCCCGGAGAATTATGTCGCCGACCTCAATGTCCGCATGTCGCTCTATCGCCGCCTGGCCTCGATCGAGACGCGCGAGGATATCGACCGTTTCGCCGCCGAGCTGATCGACCGTTTCGGGCCGCTGCCGGAGGAAGTCACGCATCTGTTCGAGATCGTCACCATCAAGCAGCTCGCCAAGCAGGCGGGGGTGGAGAAGATCGACGCCGGGCCCAAGGGCGGCACCATCGCCTTCCGGGGCAATGCCTTCGCCAATCCGCTGGCGCTGGTGCAGTTGATCGCCAAGCACAGCGGCACCATGAAGGTGCGGCCCGACCAGAAGATCGTGGTGACGCGCGACTGGCCCACCCCCAATGACCGGCTGGCGGGCGCCAAGGCGGTGCTGACCCATCTCGCCAAGCTGGCGCAGGCGGCATGA
PROTEIN sequence
Length: 198
DIRGAGNLLGEEQSGHVREVGIELYQEMLEEAVSGLKEGGEADVTDQWSPTINLGASVLIPENYVADLNVRMSLYRRLASIETREDIDRFAAELIDRFGPLPEEVTHLFEIVTIKQLAKQAGVEKIDAGPKGGTIAFRGNAFANPLALVQLIAKHSGTMKVRPDQKIVVTRDWPTPNDRLAGAKAVLTHLAKLAQAA*