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SCNpilot_expt_1000_bf_scaffold_6784_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6784_curated_1
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..596
DNA (594bp) protein (198aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Transcription-repair-coupling factor n=2 Tax=Labrenzia RepID=U7GL70_9RHOB
Mfd, transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
SCNpilot_expt_1000_bf_scaffold_6784_curated_2
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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593..913
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034C0289
hypothetical protein; K09131 hypothetical protein
UPF0235 protein Mchl_2407 {ECO:0000255|HAMAP-Rule:MF_00634}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_expt_1000_bf_scaffold_6784_curated_3
unknown

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970..1203
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6784_curated_4
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1210..1953)
DNA (744bp) protein (248aa)
Clan AA aspartic protease, TIGR02281 family n=1 Tax=Caulobacter crescentus OR37 RepID=R0EDE4_CAUCE
Clan AA aspartic protease, TIGR02281 family {ECO:0000313|EMBL:ENZ83478.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
putative aspartyl protease; K06985 aspartyl protease family protein
SCNpilot_expt_1000_bf_scaffold_6784_curated_5
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1950..2186)
DNA (237bp) protein (79aa)
Acyl-CoA dehydrogenase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LX08_9PROT
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJD53963.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_6784_curated_6
unknown

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2503..2760
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6784_curated_7
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3123..3779
DNA (657bp) protein (219aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS64258.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JVY5_BURP1
SCNpilot_expt_1000_bf_scaffold_6784_curated_8
unknown

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comp(3883..4353)
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6784_curated_trna_1
unknown

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4539..4612
DNA (74bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_6784_curated_9
unknown

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comp(4648..4893)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6784_curated_10
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5075..5479
DNA (405bp) protein (135aa)
phoD; alkaline phosphatase; K01113 alkaline phosphatase D [EC:3.1.3.1]
Alkaline phosphatase D n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGE7_PHEZH
Alkaline phosphatase D {ECO:0000313|EMBL:ACG78853.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Displaying 11 items

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