ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2438_curated_22

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(19310..19774)

Top 3 Functional Annotations

Value Algorithm Source
Chemotaxis protein CheW n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXM6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.7
  • Coverage: 154.0
  • Bit_score: 300
  • Evalue 7.00e-79
  • rbh
Chemotaxis protein CheW {ECO:0000313|EMBL:EYR77774.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.7
  • Coverage: 154.0
  • Bit_score: 300
  • Evalue 9.90e-79
putative chemotaxis protein; K03408 purine-binding chemotaxis protein CheW similarity KEGG
DB: KEGG
  • Identity: 97.4
  • Coverage: 154.0
  • Bit_score: 297
  • Evalue 3.20e-78

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 465
ATGTCCAACGCCATCAAGCAGTCCGGCGCCTATCTCGAAATCGTCTCCTTCCATCTCGGCGAGCAGGAATTCTGCATCGACATCATGGCGATCCGCGAAATCCGCGGCTGGGCGCCGGTGACGCCGATGCCGCACACGCCGCCCTACGTGCTCGGCCTCATCACCCTGCGCGGTGCGGTGATCCCGGTCATCGACATGGCCTGCCGCCTCGGCATGAAGATGACGGAGCCGTCCGAACGCTCGGCCATCATCGTCACCGACATCGCCGGCAAGCTGGTCGGCCTCCTCGTCGAGCAGGTCTCGGACATGATGACCATCAAGAGCGAGGCGCTGCAGCCGGCGCCGGAAATCATTCCGGAAGCCCAGCGCGCCTTCTGCCGCGGCATCGTGGCGCTGGAAAAGTCGATGGTCTGCTTCCTCAACCTCGACACCGTCATCGCCGACGAGCTCGCCCAGGCCGCCTGA
PROTEIN sequence
Length: 155
MSNAIKQSGAYLEIVSFHLGEQEFCIDIMAIREIRGWAPVTPMPHTPPYVLGLITLRGAVIPVIDMACRLGMKMTEPSERSAIIVTDIAGKLVGLLVEQVSDMMTIKSEALQPAPEIIPEAQRAFCRGIVALEKSMVCFLNLDTVIADELAQAA*