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SCNpilot_expt_1000_bf_scaffold_2438_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2438_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..288
DNA (288bp) protein (96aa)
Aminomethyltransferase GcvT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV35_9RHIZ
Aminomethyltransferase GcvT {ECO:0000313|EMBL:EYR81713.1}; EC=2.1.2.10 {ECO:0000313|EMBL:EYR81713.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycine cleavage system T protein (aminomethyltransferase)
SCNpilot_expt_1000_bf_scaffold_2438_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289..531
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESJ8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81712.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2438_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(509..1165)
DNA (657bp) protein (219aa)
HTH-type transcriptional repressor BepR {ECO:0000313|EMBL:EYR81711.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000361A223
TetR family transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
SCNpilot_expt_1000_bf_scaffold_2438_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1172..4306)
DNA (3135bp) protein (1045aa)
Acriflavine resistance protein B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY15_9RHIZ rbh
Acriflavine resistance protein B {ECO:0000313|EMBL:EYR77789.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
multidrug-efflux system transmembrane protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4318..5634)
DNA (1317bp) protein (439aa)
Acriflavine resistance protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNY2_9RHIZ rbh
Acriflavine resistance protein A {ECO:0000313|EMBL:EYR77788.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5824..6825)
DNA (1002bp) protein (334aa)
ATP-binding transport protein SmoK {ECO:0000313|EMBL:EYR77787.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-binding transport protein SmoK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C846_9RHIZ rbh
Glycerol-3-phosphate-transporting ATPase (EC:3.6.3.20) rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6837..7901)
DNA (1065bp) protein (355aa)
Putative oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQZ0_9RHIZ rbh
Putative oxidoreductase {ECO:0000313|EMBL:EYR77786.1}; EC=1.1.1.- {ECO:0000313|EMBL:EYR77786.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative dehydrogenase-related protein rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7898..8740)
DNA (843bp) protein (281aa)
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:EYR77785.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter permease n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000368A8E8 rbh
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8755..9705)
DNA (951bp) protein (317aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMG7_9RHIZ rbh
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR77784.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10018..10440)
DNA (423bp) protein (141aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6P9_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR77783.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_2438_curated_11
unknown

Not on your lists

10841..10969
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2438_curated_12
unknown

Not on your lists

11015..11308
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2438_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11316..12209)
DNA (894bp) protein (298aa)
N-acetylmuramic acid 6-phosphate etherase MurQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPD4_9RHIZ rbh
N-acetylmuramic acid 6-phosphate etherase MurQ {ECO:0000313|EMBL:EYR77782.1}; EC=4.2.1.126 {ECO:0000313|EMBL:EYR77782.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
murQ; N-acetylmuramic acid 6-phosphate etherase MurQ (EC:4.2.1.126) rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12406..13293
DNA (888bp) protein (296aa)
Glucosamine kinase GspK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT76_9RHIZ rbh
Glucosamine kinase GspK {ECO:0000313|EMBL:EYR77781.1}; EC=2.7.1.8 {ECO:0000313|EMBL:EYR77781.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13746..14054
DNA (309bp) protein (103aa)
Putative transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D294_9RHIZ
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR77780.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2438_curated_16
unknown

Not on your lists

comp(14315..14476)
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003793B8E
SCNpilot_expt_1000_bf_scaffold_2438_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15748..16266
DNA (519bp) protein (173aa)
N-acetylglucosamine-6-phosphate deacetylase NagA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUW4_9RHIZ rbh
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nagA; N-acetylglucosamine-6-phosphate deacetylase; K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
SCNpilot_expt_1000_bf_scaffold_2438_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16354..17409
DNA (1056bp) protein (352aa)
Putative dipeptidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDB7_9RHIZ rbh
Putative dipeptidase {ECO:0000313|EMBL:EYR77777.1}; EC=3.4.13.19 {ECO:0000313|EMBL:EYR77777.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19] rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17431..18177
DNA (747bp) protein (249aa)
Copper homeostasis protein CutC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT72_9RHIZ rbh
Copper homeostasis protein CutC {ECO:0000256|HAMAP-Rule:MF_00795}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
uncharacterized protein involved in copper resistance rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18241..18741
DNA (501bp) protein (167aa)
Putative CreA protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D289_9RHIZ
Putative CreA protein {ECO:0000313|EMBL:EYR77775.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative CreA family protein; K05805 CreA protein
SCNpilot_expt_1000_bf_scaffold_2438_curated_21
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18793..19146)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QES5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF59516.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_2438_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19310..19774)
DNA (465bp) protein (155aa)
Chemotaxis protein CheW n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXM6_9RHIZ rbh
Chemotaxis protein CheW {ECO:0000313|EMBL:EYR77774.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative chemotaxis protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_1000_bf_scaffold_2438_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20039..20197
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77773.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2438_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20987..21868
DNA (882bp) protein (294aa)
Ribosomal protein L11 methyltransferase PrmA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT69_9RHIZ rbh
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
prmA; ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_2438_curated_25
unknown

Not on your lists

comp(22290..22760)
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2438_curated_26
unknown

Not on your lists

comp(22832..23050)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2438_curated_27
unknown

Not on your lists

comp(23476..23679)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2438_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23916..24107
DNA (192bp) protein (64aa)
Aminopeptidase P-like protein {ECO:0000313|EMBL:EYR77769.1}; EC=3.4.11.9 {ECO:0000313|EMBL:EYR77769.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aminopeptidase P; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
X-Pro aminopeptidase n=1 Tax=Rhizobium meliloti RepID=UPI0003607F84
SCNpilot_expt_1000_bf_scaffold_2438_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24097..24240)
DNA (144bp) protein (48aa)
Putative membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVI9_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EYR77768.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2438_curated_30
unknown

Not on your lists

24496..25260
DNA (765bp) protein (255aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

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