name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2438_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1..288
|
Aminomethyltransferase GcvT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV35_9RHIZ
Aminomethyltransferase GcvT {ECO:0000313|EMBL:EYR81713.1}; EC=2.1.2.10 {ECO:0000313|EMBL:EYR81713.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycine cleavage system T protein (aminomethyltransferase)
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
289..531
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESJ8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81712.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(509..1165)
|
HTH-type transcriptional repressor BepR {ECO:0000313|EMBL:EYR81711.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000361A223
TetR family transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1172..4306)
|
Acriflavine resistance protein B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY15_9RHIZ
rbh
Acriflavine resistance protein B {ECO:0000313|EMBL:EYR77789.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
multidrug-efflux system transmembrane protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4318..5634)
|
Acriflavine resistance protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNY2_9RHIZ
rbh
Acriflavine resistance protein A {ECO:0000313|EMBL:EYR77788.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5824..6825)
|
ATP-binding transport protein SmoK {ECO:0000313|EMBL:EYR77787.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-binding transport protein SmoK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C846_9RHIZ
rbh
Glycerol-3-phosphate-transporting ATPase (EC:3.6.3.20)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6837..7901)
|
Putative oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQZ0_9RHIZ
rbh
Putative oxidoreductase {ECO:0000313|EMBL:EYR77786.1}; EC=1.1.1.- {ECO:0000313|EMBL:EYR77786.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative dehydrogenase-related protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7898..8740)
|
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:EYR77785.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter permease n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000368A8E8
rbh
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8755..9705)
|
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMG7_9RHIZ
rbh
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR77784.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10018..10440)
|
Extracellular solute-binding protein, family 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6P9_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR77783.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
family 1 extracellular solute-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_11
unknown
|
Not on your lists |
10841..10969
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_12
unknown
|
Not on your lists |
11015..11308
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11316..12209)
|
N-acetylmuramic acid 6-phosphate etherase MurQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPD4_9RHIZ
rbh
N-acetylmuramic acid 6-phosphate etherase MurQ {ECO:0000313|EMBL:EYR77782.1}; EC=4.2.1.126 {ECO:0000313|EMBL:EYR77782.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
murQ; N-acetylmuramic acid 6-phosphate etherase MurQ (EC:4.2.1.126)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12406..13293
|
Glucosamine kinase GspK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT76_9RHIZ
rbh
Glucosamine kinase GspK {ECO:0000313|EMBL:EYR77781.1}; EC=2.7.1.8 {ECO:0000313|EMBL:EYR77781.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13746..14054
|
Putative transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D294_9RHIZ
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR77780.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_16
unknown
|
Not on your lists |
comp(14315..14476)
|
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003793B8E
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15748..16266
|
N-acetylglucosamine-6-phosphate deacetylase NagA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUW4_9RHIZ
rbh
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nagA; N-acetylglucosamine-6-phosphate deacetylase; K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16354..17409
|
Putative dipeptidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDB7_9RHIZ
rbh
Putative dipeptidase {ECO:0000313|EMBL:EYR77777.1}; EC=3.4.13.19 {ECO:0000313|EMBL:EYR77777.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17431..18177
|
Copper homeostasis protein CutC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT72_9RHIZ
rbh
Copper homeostasis protein CutC {ECO:0000256|HAMAP-Rule:MF_00795}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
uncharacterized protein involved in copper resistance
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18241..18741
|
Putative CreA protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D289_9RHIZ
Putative CreA protein {ECO:0000313|EMBL:EYR77775.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative CreA family protein; K05805 CreA protein
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_21
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18793..19146)
|
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QES5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF59516.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19310..19774)
|
Chemotaxis protein CheW n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXM6_9RHIZ
rbh
Chemotaxis protein CheW {ECO:0000313|EMBL:EYR77774.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative chemotaxis protein; K03408 purine-binding chemotaxis protein CheW
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20039..20197
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77773.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20987..21868
|
Ribosomal protein L11 methyltransferase PrmA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT69_9RHIZ
rbh
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
prmA; ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_25
unknown
|
Not on your lists |
comp(22290..22760)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_26
unknown
|
Not on your lists |
comp(22832..23050)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_27
unknown
|
Not on your lists |
comp(23476..23679)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23916..24107
|
Aminopeptidase P-like protein {ECO:0000313|EMBL:EYR77769.1}; EC=3.4.11.9 {ECO:0000313|EMBL:EYR77769.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aminopeptidase P; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
X-Pro aminopeptidase n=1 Tax=Rhizobium meliloti RepID=UPI0003607F84
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24097..24240)
|
Putative membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVI9_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EYR77768.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2438_curated_30
unknown
|
Not on your lists |
24496..25260
|
This feature has no annotations |