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SCNpilot_expt_1000_bf_scaffold_2438_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(509..1165)

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional repressor BepR {ECO:0000313|EMBL:EYR81711.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.9
  • Coverage: 161.0
  • Bit_score: 280
  • Evalue 2.00e-72
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000361A223 similarity UNIREF
DB: UNIREF100
  • Identity: 60.7
  • Coverage: 196.0
  • Bit_score: 250
  • Evalue 2.00e-63
TetR family transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor similarity KEGG
DB: KEGG
  • Identity: 57.7
  • Coverage: 196.0
  • Bit_score: 244
  • Evalue 3.50e-62

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 657
ATGCGCCGGACCAAGGCAGGGGCCGAGGAAACCCGCCAGCAGATCCTGCTGGCGGCGGAACGGGTCTTCTACGAAAAGGGCGTCTCCCATGCCTCCATGGAGGATGTGGCGCGCGCCGCGGGGGTGACCCGCGGCGCCATCTACTGGCACTTCGCCAACCGGGCGGACCTCGTGCTGGAACTCTACGATTCTCTCCCCCTGCCGCAGGAAGACCTGATCGCCCGCGAACTGGAGGCGGAGAATGTCGACGTGCTCGCCGTCCTGGAGCGGGTCGGCAAGCAGTGGATCGAGCTGCTGGCCGAGGACGAGCACCGCCAGCGCATCCTGTCGATCCTCCTGCGCTGCGACGTCACCGGCGAGGTCGCCCGCATCTCCGAGCGCCAGAACGATATCGACGACGAGCATATGCAGGCGCTGGAGGCGGCCTTCGCCAAGGCGCAGAGGCAGGGCCGGCTCTGCGCCTGCTGGACGCCGCGCTCGGCCGCGTCCCTTCTGCGCTGGGTCATCAAGGGCCTTTGCTCGGAATGGCTGCTGTTCGGCCGCCGGTTCGACATCGCGAGCGAGGGCAAGGAGGCGTTGCGGCGGCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCAGGCTGAGCGATAGGCCTTGA
PROTEIN sequence
Length: 219
MRRTKAGAEETRQQILLAAERVFYEKGVSHASMEDVARAAGVTRGAIYWHFANRADLVLELYDSLPLPQEDLIARELEAENVDVLAVLERVGKQWIELLAEDEHRQRILSILLRCDVTGEVARISERQNDIDDEHMQALEAAFAKAQRQGRLCACWTPRSAASLLRWVIKGLCSEWLLFGRRFDIASEGKEALRRLXXXXXXXXXXXXXXXVRLSDRP*