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SCNpilot_expt_1000_bf_scaffold_2438_curated_10

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(10018..10440)

Top 3 Functional Annotations

Value Algorithm Source
Extracellular solute-binding protein, family 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6P9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.3
  • Coverage: 140.0
  • Bit_score: 278
  • Evalue 4.40e-72
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR77783.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.3
  • Coverage: 140.0
  • Bit_score: 278
  • Evalue 6.20e-72
family 1 extracellular solute-binding protein similarity KEGG
DB: KEGG
  • Identity: 90.7
  • Coverage: 140.0
  • Bit_score: 270
  • Evalue 2.20e-70

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 423
ATGGGCGCGTTCCCGCCGCCGGTGAAGAATGCCGGCGACACCTGCTACATCTCCGACCACAACGACATCGGCGTCGGCCTCAACGCCAAGAGCCCGAATGCGGACGCCGCCAGGACGTTCCTGTCCTTCGTCGCCTCGCCGGAATTCGCCGACATCTACGCCAACTCGCTGCCGGGCTTCTTCAGCCTGAACTCGACGGCGGTGAAGATGAACGACCCGCTGGCGCAGGAATTCGTCTCCTGGCGCGAGAAGTGCCAGCCGACGATCCGCTCGACCTACCAGATCCTGTCGCGTGGCACGCCGAACCTCGAAAACGAGACCTGGACGGAATCGGCCAACGTCATCAACGGCACCGACACGCCGGAAGTGGCCGCCGAAAAGCTCCAGAAGGGCCTCGACAGCTGGTACAAGCCGGCCAAGTAA
PROTEIN sequence
Length: 141
MGAFPPPVKNAGDTCYISDHNDIGVGLNAKSPNADAARTFLSFVASPEFADIYANSLPGFFSLNSTAVKMNDPLAQEFVSWREKCQPTIRSTYQILSRGTPNLENETWTESANVINGTDTPEVAAEKLQKGLDSWYKPAK*