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SCNpilot_expt_1000_bf_scaffold_7348_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(4344..6371)

Top 3 Functional Annotations

Value Algorithm Source
Methyl-accepting chemotaxis sensory transducer with Cache sensor {ECO:0000313|EMBL:EYR80168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.8
  • Coverage: 690.0
  • Bit_score: 1136
  • Evalue 0.0
chemoreceptor methyl-accepting chemotaxis transmembrane protein n=1 Tax=Rhizobium meliloti RepID=UPI000380DF45 similarity UNIREF
DB: UNIREF100
  • Identity: 72.6
  • Coverage: 690.0
  • Bit_score: 943
  • Evalue 1.20e-271
  • rbh
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein similarity KEGG
DB: KEGG
  • Identity: 72.1
  • Coverage: 691.0
  • Bit_score: 940
  • Evalue 3.10e-271
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2028
ATGACGCGCATCCTCGTCGTCGCGTCCCTCGTCGTCATCGCCGCCTTCACCGGCTTCTCCCTCTATATCGACAGCCTGCAGCGCTCCGTGCTGACGAAATCCGTCGAGGAAAGCATCGACAGCTCCGGCAAGCAGGCCGCCCAGAGCATCGCCAACTGGCTGAACGCCCGCGTGGCGCTGACCGAGATGGCCGCCAACGCCGCCGCCCGGACCGCCGATCCTGCCGGCATCGAGGCCGTCCTCGACAACCAGGTCCTCATCAGCCAGTTCATCTCCACCTATGTCGGCGACGAGGCGGGCGTCTTCACGCAATGGCCGAAGTCGGATATGCCGGAAGGCTACGATCCGCGCCAGCGCCCCTGGTACCAGGATGCCGTCAAGGCGAATGGCAGCGTGCTGACCGAGCCCTATGTCGATGCCTCGACCGGCGACCTCGTCATCACCGCGGCGCTTCCCGTCAAGCGCGACGGCAAGCTTGCCGGCGTTGCCGGCAGCGACTTCTCGCTGAAGTCCCTCGTCGACATGGTCAACTCCGTCGATCTCGGCGGGGCGGGCTTCGCCTTCCTCGTCAGCAAGGACGGCCAGATCCTCGTGCACCAGGACAAGGCGCTCGTCACCAGGTCGCTTGCCGATGCCTTCCCGCAGAAGACGCCCGCCATCGGCGGCGGCATCACCTACACGACCTATGCCGGCAAGCCGGCGCTGGTCTCCTTCGTGCCGGTCACGGGCCTGCCGTCGGTGGAATGGTATCTCGGCTTCACCATCGACAGCGGCGTGGCATTTGCGGCCATCGACCAGTTCCGCATCGCCGCGACCATCGCCACGGTTCTCGCCGTCATCGGCATGATGGGCTTCCTCGCCACCGTGCTCTCGCGCCTCGTCGTGCGCCCGGTGAAGGACATGACGGCCGCCATGGACAAGCTCGCCTCCGGCGATGTCGAGACGGACATTCCCGGCGAGGAGCGCCGTGACGAGATCGGCCGCATGGCCGCCGCGGTCGCCGTGTTCCGCGACAATGCCATCGAGCGCGCGCGCCTCGAGACCGCCGCCGAGGAGGGCCGCGTGCTCTCCGAAAGCGAGCGCCGCGAGCGCGAGGCGATGAAGGCCCGCGAAGCGGCCGAGATCCGGCACGCCGTCGAGGCGCTGGCGGACGGCCTCGGCCGCCTTGCCGACGGCGATCTCGCCCACCGCATCGAAACCCCCTTCGCCGGTCATCTCGACCGCCTGCGCACCGACTTCAACCACTCCCTCGCGAAGTTGCACCCGGCGATGACGACGGTCGGCCAGAATGCCCGTGCCATCGATGCCGGCGCCACGNNNNNNNNNNNNNNNNNNNNGGAGCCCGCCGCCGCGCTGGAGGAGATCACCACCACCGTGAAGGACTCGACCCGCCGGGCCGAGGAGGTGGGCTCGCTCGTCTCGCGCACCCGCACTGGCGCCGAAAAGTCGGGCGAAGTGGTGCGCCGGGCCGTCTCGGCCATGCAGGGCATCGAGAAGTCCTCGCACGAGATCTCCAACATCATCGGCGTCATCGACGACATCGCCTTCCAGACGAACCTGCTGGCGCTCAATGCCGGCGTCGAGGCTGCCCGCGCGGGCGAGGCCGGCAAGGGCTTCGCGGTCGTGGCGCAGGAAGTGCGCGAGCTCGCCCAGCGCTCGGCCAATGCCGCCAAGGAGATCAAGACGCTGATCACCGCCTCCGGCGAGCAGGTCCGCTCCGGCGTGGCACTGGTCGACGAAACGGGCGCGGCCCTTGAGGCCATCGTCCGCGAGGTGCAGGAGATCAACGGCCACGTCAACGCCATCGTGACCTCCGCCCGCGAACAGTCGACCGGCCTCCAGGAGATCAACACCGCCGTCAACACGATGGACCAGGGCACCCAGCAGAATGCCGCCATGGTGGAGGAACAGACCGCCGCCAGCCACGGCCTCGCCGCCGAAGCCGCCGCGCTCAACGCCCTCCTGGCCCAGTTCAGGCTCGGCCAGGGCGAAGCAGCCACCGCCGCTCCTGCCCGACGCGCGGCGTGA
PROTEIN sequence
Length: 676
MTRILVVASLVVIAAFTGFSLYIDSLQRSVLTKSVEESIDSSGKQAAQSIANWLNARVALTEMAANAAARTADPAGIEAVLDNQVLISQFISTYVGDEAGVFTQWPKSDMPEGYDPRQRPWYQDAVKANGSVLTEPYVDASTGDLVITAALPVKRDGKLAGVAGSDFSLKSLVDMVNSVDLGGAGFAFLVSKDGQILVHQDKALVTRSLADAFPQKTPAIGGGITYTTYAGKPALVSFVPVTGLPSVEWYLGFTIDSGVAFAAIDQFRIAATIATVLAVIGMMGFLATVLSRLVVRPVKDMTAAMDKLASGDVETDIPGEERRDEIGRMAAAVAVFRDNAIERARLETAAEEGRVLSESERREREAMKAREAAEIRHAVEALADGLGRLADGDLAHRIETPFAGHLDRLRTDFNHSLAKLHPAMTTVGQNARAIDAGATXXXXXXXEPAAALEEITTTVKDSTRRAEEVGSLVSRTRTGAEKSGEVVRRAVSAMQGIEKSSHEISNIIGVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSANAAKEIKTLITASGEQVRSGVALVDETGAALEAIVREVQEINGHVNAIVTSAREQSTGLQEINTAVNTMDQGTQQNAAMVEEQTAASHGLAAEAAALNALLAQFRLGQGEAATAAPARRAA*