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SCNpilot_expt_1000_bf_scaffold_7348_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7348_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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647..1360
DNA (714bp) protein (238aa)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD97_9RHIZ rbh
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] rbh
SCNpilot_expt_1000_bf_scaffold_7348_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1546..2298
DNA (753bp) protein (251aa)
16S/23S rRNA (Cytidine-2'-O)-methyltransferase TlyA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT63_9RHIZ rbh
16S/23S rRNA (Cytidine-2'-O)-methyltransferase TlyA {ECO:0000313|EMBL:EYR80165.1}; EC=2.1.1.226 {ECO:0000313|EMBL:EYR80165.1};; EC=2.1.1.227 {ECO:0000313|EMBL:EYR80165.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_7348_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2295..3548
DNA (1254bp) protein (418aa)
RNA methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDA2_9RHIZ rbh
RNA methyltransferase {ECO:0000313|EMBL:EYR80166.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] rbh
SCNpilot_expt_1000_bf_scaffold_7348_curated_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3550..3975)
DNA (426bp) protein (142aa)
Plasmid stability protein StbB {ECO:0000313|EMBL:BAR63234.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
PilT protein n=1 Tax=mine drainage metagenome RepID=T0ZPP9_9ZZZZ
stbB; plasmid stability protein StbB; K07062
SCNpilot_expt_1000_bf_scaffold_7348_curated_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3975..4229)
DNA (255bp) protein (85aa)
Prevent-host-death family protein {ECO:0000313|EMBL:BAR63694.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Y392_9BACT
prevent-host-death family protein
SCNpilot_expt_1000_bf_scaffold_7348_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4344..6371)
DNA (2028bp) protein (676aa)
Methyl-accepting chemotaxis sensory transducer with Cache sensor {ECO:0000313|EMBL:EYR80168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chemoreceptor methyl-accepting chemotaxis transmembrane protein n=1 Tax=Rhizobium meliloti RepID=UPI000380DF45 rbh
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_7348_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6572..6919)
DNA (348bp) protein (116aa)
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EYR80169.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BUK9_RHILT
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_7348_curated_8
unknown

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comp(7492..7569)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 8 items

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