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SCNpilot_expt_1000_bf_scaffold_40202_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(4065..4220)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000380CD34 similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 50.0
  • Bit_score: 89
  • Evalue 1.40e-15
Oligopeptide ABC transport system permease protein AppC {ECO:0000313|EMBL:EYR81115.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 50.0
  • Bit_score: 77
  • Evalue 6.00e-12
ABC transporter inner membrane protein; K02034 peptide/nickel transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 58.0
  • Coverage: 50.0
  • Bit_score: 63
  • Evalue 2.60e-08

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 156
GGCACGATCATCTCCGGCGGTACGCAGTACCTGCTGAATGCGTGGTGGATCACCATCGTACCCGGCTGCCTGCTGGCGCTCTCGCTGGGCAGCCTGAACCTCATCGGCGGCGTTCTGGAGAGAAGCCGGAACCTCATTCTACAGGGAGCAGCGTGA
PROTEIN sequence
Length: 52
GTIISGGTQYLLNAWWITIVPGCLLALSLGSLNLIGGVLERSRNLILQGAA*