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SCNpilot_expt_1000_bf_scaffold_3649_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 8521..9588

Top 3 Functional Annotations

Value Algorithm Source
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.2
  • Coverage: 355.0
  • Bit_score: 680
  • Evalue 1.80e-192
trpS; tryptophan--tRNA ligase TrpS (EC:6.1.1.2) similarity KEGG
DB: KEGG
  • Identity: 88.7
  • Coverage: 355.0
  • Bit_score: 627
  • Evalue 3.10e-177
  • rbh
Tryptophan--tRNA ligase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WYD3_RHIFR similarity UNIREF
DB: UNIREF100
  • Identity: 88.7
  • Coverage: 355.0
  • Bit_score: 627
  • Evalue 9.90e-177
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1068
ATGAGCGCATTCAAGCCTCTCGTCTTCTCCGGCGTCCAGCCGACCGGCAACCTCCACCTCGGCAACTATCTCGGCGCGATCCGCAAGTTCGTCGCCCTGCAGGAGGACAACGACTGCATCTATTGCGTCGTCGACCTGCATGCGCTGACCGCCCAGCTCGTCCACGACGACATGCGGGGCCAGATCCGCTCGATCGCCGCCGCCTTCATCGCCTCCGGCATCGACCCGAAGAAGCACATCGTCTTCAACCAGTCCGCCGTGCCGCAGCATTCCGAGCTCGCCTGGATCTTCAACTGCGTGGCGCGCATCGGCTGGATGGAGCGCATGACGCAGTTCAAGGACAAGGCCGGCGGCAAGAATGCCGAGCAGGTCTCGCTCGGCCTTCTCGCCTATCCGAGCCTGATGGCCGCCGACATCCTCGTCTACCGCGCGACGCACGTTCCGGTCGGCGACGACCAGAAGCAGCATCTGGAGCTGACGCGCGACATCGCCCAGAAGTTCAACATCGACTTCGGCGCCCACATCCGCAAGGCCGGCACGGGCGTCGACATTGTCGTCGGCGAGGAGCCGGTGCATGCCTATTTCCCGATGGTCGAGCCGCTGATCGGTGGTCCGGCGCCGCGCGTCATGAGCCTGCGCGACGGCACGAAGAAGATGTCGAAGTCGGATGCCTCCGATCTCTCGCGCATCAATCTTCTCGACGATGCCGACACCATCTCCAAGAAGATCCGCAAGGCCAAGACCGACCCGGATGCCCTGCCGAGCGAGGCCGAGGGCCTCAAGGGCCGTCCCGAGGCGGAAAACCTCGTCGGCATCTATGCCGCGCTCTCCGACAAGTCCAAGGCCGATATCCTCGCCGAGTTCGGCGGCCAGCAGTTCTCGGTCTTCAAGCCGGCGCTGATCGATCTCGCGGTCAACGTGCTTTCGCCGATCACCGGCGAGATGCGCCGCCTGATGGACGACACCAGCCATATCGACGCGATCCTCCGGGACGGCGGCGAAAGGGCGCGGGCGCGGGCCGAGAAAACCATGAAGGAAGTTCGCGACATCATCGGCTTTGTGCAGTAA
PROTEIN sequence
Length: 356
MSAFKPLVFSGVQPTGNLHLGNYLGAIRKFVALQEDNDCIYCVVDLHALTAQLVHDDMRGQIRSIAAAFIASGIDPKKHIVFNQSAVPQHSELAWIFNCVARIGWMERMTQFKDKAGGKNAEQVSLGLLAYPSLMAADILVYRATHVPVGDDQKQHLELTRDIAQKFNIDFGAHIRKAGTGVDIVVGEEPVHAYFPMVEPLIGGPAPRVMSLRDGTKKMSKSDASDLSRINLLDDADTISKKIRKAKTDPDALPSEAEGLKGRPEAENLVGIYAALSDKSKADILAEFGGQQFSVFKPALIDLAVNVLSPITGEMRRLMDDTSHIDAILRDGGERARARAEKTMKEVRDIIGFVQ*