name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_3649_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..420)
|
NADP-dependent malic enzyme {ECO:0000313|EMBL:EYR83281.1}; EC=1.1.1.40 {ECO:0000313|EMBL:EYR83281.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADP-dependent malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
malic enzyme n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000366B98E
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
534..3269
|
DNA mismatch repair protein MutS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEL6_9RHIZ
rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mutS; DNA mismatch repair protein MutS
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3313..6207
|
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUJ3_9RHIZ
rbh
glnD; PII uridylyl-transferase (EC:2.7.7.59)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_4
unknown
|
Not on your lists |
comp(6326..6607)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_5
unknown
|
Not on your lists |
comp(6827..6997)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7645..7794
|
Protein MurJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3J3_9RHIZ
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7805..8281)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYU5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83277.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptidase M15A
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8521..9588
|
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trpS; tryptophan--tRNA ligase TrpS (EC:6.1.1.2)
rbh
Tryptophan--tRNA ligase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WYD3_RHIFR
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9624..10115
|
UspA domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7R5_9RHIZ
UspA domain-containing protein {ECO:0000313|EMBL:EYR83275.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
universal stress protein UspA
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10212..10781
|
Putative scaffold protein Nfu/NifU n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQK2_9RHIZ
rbh
Putative scaffold protein Nfu/NifU {ECO:0000313|EMBL:EYR83274.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
scaffold protein Nfu/NifU
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10812..11459
|
Universal bacterial protein YeaZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT37_9RHIZ
rbh
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EYR83273.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative peptidase M22, glycoprotease
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11460..11954
|
GCN5-like N-acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXP3_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EYR83272.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11992..12417
|
Ferric uptake regulation protein Fur n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNL9_9RHIZ
Ferric uptake regulation protein Fur {ECO:0000313|EMBL:EYR83271.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fur; ferric uptake regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_14
unknown
|
Not on your lists |
comp(12856..13122)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13411..14799
|
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQK6_9RHIZ
rbh
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14827..15879
|
PhoH-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT40_9RHIZ
rbh
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:EYR83268.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15894..16403
|
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07042 probable rRNA maturation factor
rRNA maturation factor n=1 Tax=Rhizobium giardinii RepID=UPI00035CE01D
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16413..17564
|
Putative hemolysin C {ECO:0000313|EMBL:EYR83266.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hemolysin-related protein
rbh
Putative hemolysin-related protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9V6_RHIFH
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17817..18431
|
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=2 Tax=Rhizobium/Agrobacterium group RepID=LNT_AGRRK
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18377..19462
|
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9V8_RHIFH
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19610..20029
|
Putative transcriptional regulator {ECO:0000313|EMBL:EYR83264.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JF39_9RHIZ
HTH-type transcriptional regulator R00410
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20235..21473
|
S-adenosylmethionine synthase MetK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZA7_9RHIZ
rbh
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21481..22182
|
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trmB; putative tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
rbh
tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Rhizobium meliloti RepID=F7X5W6_SINMM
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22213..22470)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR83261.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00038294A4
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22601..23032)
|
Molecular chaperone {ECO:0000313|EMBL:EYR83260.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hspH; small heat shock protein Hsp20
Small heat shock protein ibpA 16 kDa heat shock protein A n=2 Tax=Rhizobium fredii RepID=G9A9W3_RHIFH
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23215..24156
|
Pyrimidine-specific ribonucleoside hydrolase RihA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY20_9RHIZ
rbh
Pyrimidine-specific ribonucleoside hydrolase RihA {ECO:0000313|EMBL:EYR83259.1}; EC=3.2.-.- {ECO:0000313|EMBL:EYR83259.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24156..24515
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH88_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83258.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24585..26918)
|
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX86_9RHIZ
rbh
Chemoreceptor McpA {ECO:0000313|EMBL:EYR83257.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpX; chemoreceptor methyl-accepting chemotaxis transmembrane protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27086..28090)
|
Ribokinase RbsK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D661_9RHIZ
rbh
Ribokinase RbsK {ECO:0000313|EMBL:EYR83256.1}; EC=2.7.1.15 {ECO:0000313|EMBL:EYR83256.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_3649_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28135..29328)
|
Putative DNA recombination protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1L7_9RHIZ
rbh
Putative DNA recombination protein {ECO:0000313|EMBL:EYR83255.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA recombination protein; K09760 DNA recombination protein RmuC
rbh
|