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SCNpilot_expt_1000_bf_scaffold_3649_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3649_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..420)
DNA (420bp) protein (140aa)
NADP-dependent malic enzyme {ECO:0000313|EMBL:EYR83281.1}; EC=1.1.1.40 {ECO:0000313|EMBL:EYR83281.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADP-dependent malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
malic enzyme n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000366B98E
SCNpilot_expt_1000_bf_scaffold_3649_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

534..3269
DNA (2736bp) protein (912aa)
DNA mismatch repair protein MutS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEL6_9RHIZ rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mutS; DNA mismatch repair protein MutS rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3313..6207
DNA (2895bp) protein (965aa)
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUJ3_9RHIZ rbh
glnD; PII uridylyl-transferase (EC:2.7.7.59) rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_4
unknown

Not on your lists

comp(6326..6607)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3649_curated_5
unknown

Not on your lists

comp(6827..6997)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3649_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7645..7794
DNA (150bp) protein (50aa)
Protein MurJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3J3_9RHIZ
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_3649_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7805..8281)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYU5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83277.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptidase M15A
SCNpilot_expt_1000_bf_scaffold_3649_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8521..9588
DNA (1068bp) protein (356aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trpS; tryptophan--tRNA ligase TrpS (EC:6.1.1.2) rbh
Tryptophan--tRNA ligase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WYD3_RHIFR rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9624..10115
DNA (492bp) protein (164aa)
UspA domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7R5_9RHIZ
UspA domain-containing protein {ECO:0000313|EMBL:EYR83275.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
universal stress protein UspA
SCNpilot_expt_1000_bf_scaffold_3649_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10212..10781
DNA (570bp) protein (190aa)
Putative scaffold protein Nfu/NifU n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQK2_9RHIZ rbh
Putative scaffold protein Nfu/NifU {ECO:0000313|EMBL:EYR83274.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
scaffold protein Nfu/NifU rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10812..11459
DNA (648bp) protein (216aa)
Universal bacterial protein YeaZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT37_9RHIZ rbh
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EYR83273.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative peptidase M22, glycoprotease
SCNpilot_expt_1000_bf_scaffold_3649_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11460..11954
DNA (495bp) protein (165aa)
GCN5-like N-acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXP3_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EYR83272.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
SCNpilot_expt_1000_bf_scaffold_3649_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11992..12417
DNA (426bp) protein (142aa)
Ferric uptake regulation protein Fur n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNL9_9RHIZ
Ferric uptake regulation protein Fur {ECO:0000313|EMBL:EYR83271.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fur; ferric uptake regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_expt_1000_bf_scaffold_3649_curated_14
unknown

Not on your lists

comp(12856..13122)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3649_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13411..14799
DNA (1389bp) protein (463aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQK6_9RHIZ rbh
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14827..15879
DNA (1053bp) protein (351aa)
PhoH-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT40_9RHIZ rbh
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:EYR83268.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15894..16403
DNA (510bp) protein (170aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07042 probable rRNA maturation factor
rRNA maturation factor n=1 Tax=Rhizobium giardinii RepID=UPI00035CE01D
SCNpilot_expt_1000_bf_scaffold_3649_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16413..17564
DNA (1152bp) protein (384aa)
Putative hemolysin C {ECO:0000313|EMBL:EYR83266.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hemolysin-related protein rbh
Putative hemolysin-related protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9V6_RHIFH rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17817..18431
DNA (615bp) protein (205aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=2 Tax=Rhizobium/Agrobacterium group RepID=LNT_AGRRK
SCNpilot_expt_1000_bf_scaffold_3649_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18377..19462
DNA (1086bp) protein (362aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9V8_RHIFH
SCNpilot_expt_1000_bf_scaffold_3649_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19610..20029
DNA (420bp) protein (140aa)
Putative transcriptional regulator {ECO:0000313|EMBL:EYR83264.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JF39_9RHIZ
HTH-type transcriptional regulator R00410
SCNpilot_expt_1000_bf_scaffold_3649_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20235..21473
DNA (1239bp) protein (413aa)
S-adenosylmethionine synthase MetK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZA7_9RHIZ rbh
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
S-adenosylmethionine synthetase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21481..22182
DNA (702bp) protein (234aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trmB; putative tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] rbh
tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Rhizobium meliloti RepID=F7X5W6_SINMM rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22213..22470)
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR83261.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00038294A4
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3649_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22601..23032)
DNA (432bp) protein (144aa)
Molecular chaperone {ECO:0000313|EMBL:EYR83260.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hspH; small heat shock protein Hsp20
Small heat shock protein ibpA 16 kDa heat shock protein A n=2 Tax=Rhizobium fredii RepID=G9A9W3_RHIFH
SCNpilot_expt_1000_bf_scaffold_3649_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23215..24156
DNA (942bp) protein (314aa)
Pyrimidine-specific ribonucleoside hydrolase RihA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY20_9RHIZ rbh
Pyrimidine-specific ribonucleoside hydrolase RihA {ECO:0000313|EMBL:EYR83259.1}; EC=3.2.-.- {ECO:0000313|EMBL:EYR83259.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inosine/uridine-preferring nucleoside hydrolase; K01239 purine nucleosidase [EC:3.2.2.1] rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24156..24515
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH88_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83258.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_3649_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24585..26918)
DNA (2334bp) protein (778aa)
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX86_9RHIZ rbh
Chemoreceptor McpA {ECO:0000313|EMBL:EYR83257.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpX; chemoreceptor methyl-accepting chemotaxis transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27086..28090)
DNA (1005bp) protein (335aa)
Ribokinase RbsK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D661_9RHIZ rbh
Ribokinase RbsK {ECO:0000313|EMBL:EYR83256.1}; EC=2.7.1.15 {ECO:0000313|EMBL:EYR83256.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ribokinase; K00852 ribokinase [EC:2.7.1.15] rbh
SCNpilot_expt_1000_bf_scaffold_3649_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28135..29328)
DNA (1194bp) protein (398aa)
Putative DNA recombination protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1L7_9RHIZ rbh
Putative DNA recombination protein {ECO:0000313|EMBL:EYR83255.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA recombination protein; K09760 DNA recombination protein RmuC rbh
Displaying 30 items

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