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SCNpilot_expt_1000_bf_scaffold_3649_curated_17

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 15894..16403

Top 3 Functional Annotations

Value Algorithm Source
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.3
  • Coverage: 169.0
  • Bit_score: 324
  • Evalue 9.10e-86
hypothetical protein; K07042 probable rRNA maturation factor similarity KEGG
DB: KEGG
  • Identity: 74.4
  • Coverage: 168.0
  • Bit_score: 263
  • Evalue 5.60e-68
rRNA maturation factor n=1 Tax=Rhizobium giardinii RepID=UPI00035CE01D similarity UNIREF
DB: UNIREF100
  • Identity: 76.5
  • Coverage: 166.0
  • Bit_score: 263
  • Evalue 1.40e-67

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
ATGAGCGAACTCGACATCCAGATCTCCATCGAGGAGGGCGCATGGCCCTCCGAGGAGCGCCTGTTCGACATGAGCGGGCGTGTGCTCGGCGCGGCGGCGGATTACCTGCGAAAGCAGGAAAAGCAGCCGTTTCCGAAGACCGGCGCACCGGAGGTCTCGCTCGTCTTCACGAATGACGAGAGCATCCGCGCGATCAACGCGGAATGGCGCAGCCAGGACAAGCCGACCAACGTCCTTTCCTTCCCCGCCTTCCCGGTGACGCCGGGAAAAATGCCCGGCCCGATGCTCGGCGACATCATCTTCGCCGAGGAAACATTGACCCGCGAGGCGGCCGATCTCGGCAAGTCATTCGACGATCATCTCACGCATCTCATGGTGCATGGATTTCTGCATCTCTTCGGTTATGATCACATGGCAGACGAAGAGGCTGAAAAAATGGAGGGGCTGGAGACTCGCATTCTTGCCGAGCTTGGCCTATCTGACCCTTACGGGGATGGCCCCGAAGAATAG
PROTEIN sequence
Length: 170
MSELDIQISIEEGAWPSEERLFDMSGRVLGAAADYLRKQEKQPFPKTGAPEVSLVFTNDESIRAINAEWRSQDKPTNVLSFPAFPVTPGKMPGPMLGDIIFAEETLTREAADLGKSFDDHLTHLMVHGFLHLFGYDHMADEEAEKMEGLETRILAELGLSDPYGDGPEE*