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SCNpilot_expt_1000_bf_scaffold_1677_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3..356)

Top 3 Functional Annotations

Value Algorithm Source
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.1
  • Coverage: 118.0
  • Bit_score: 228
  • Evalue 4.40e-57
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR83685.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.1
  • Coverage: 118.0
  • Bit_score: 228
  • Evalue 6.20e-57
frcB; FrcB; K10552 fructose transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 93.2
  • Coverage: 117.0
  • Bit_score: 222
  • Evalue 1.00e-55

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 354
ATGACCTTTGCCACCGACAACCTGCTGGCCGGCGAGCTGATCGGCAAGTGGGCCGCCGCCACGCTCGGCGATGCCGCCAAGGATGCCAGGGTCGCCTTCCTCGACCTGACGCCCTCCCAGCCGTCGGTAGACGTGCTGCGCGACCAGGGCTTCATGAAGGGCTTCGGCATCGACGTGAAGGACATCAACAAGATCGGCGACGAGGACGATCCGCGCATCGTCGGCCACGACATCACCAACGGCAACGAGGAAGGCGGCCGCACCGCCATGGAAAACCTCCTGCAGAAGGACCCGTCCATCAACGTCGTGCACACGATCAACGAACCGGCCGCCGCCGGCGCCTATGAGGCGCTG
PROTEIN sequence
Length: 118
MTFATDNLLAGELIGKWAAATLGDAAKDARVAFLDLTPSQPSVDVLRDQGFMKGFGIDVKDINKIGDEDDPRIVGHDITNGNEEGGRTAMENLLQKDPSINVVHTINEPAAAGAYEAL