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SCNpilot_expt_1000_bf_scaffold_1677_curated

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1677_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..356)
DNA (354bp) protein (118aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW2_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR83685.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
frcB; FrcB; K10552 fructose transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1677_curated_2
unknown

Not on your lists

comp(1062..1247)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1677_curated_3
unknown

Not on your lists

comp(1365..1529)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1677_curated_4
unknown

Not on your lists

comp(1668..1817)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1677_curated_5
unknown

Not on your lists

comp(1818..1997)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1677_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2257..2628
DNA (372bp) protein (124aa)
Fucose dissimilation pathway protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRF4_9RHIZ
Fucose dissimilation pathway protein {ECO:0000313|EMBL:EYR83683.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transporter; K02431 L-fucose mutarotase [EC:5.1.3.-]
SCNpilot_expt_1000_bf_scaffold_1677_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3076..3408
DNA (333bp) protein (111aa)
GMP synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETB3_9RHIZ
GMP synthase {ECO:0000313|EMBL:EYR83681.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutamine amidotransferase protein
SCNpilot_expt_1000_bf_scaffold_1677_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3470..4894)
DNA (1425bp) protein (475aa)
Putative rhizopine catabolism regulatory protein MocR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW6_9RHIZ rbh
Putative rhizopine catabolism regulatory protein MocR {ECO:0000313|EMBL:EYR83680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4936..5655
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0F6_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83679.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07005 rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5763..5990
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETB6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83676.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K02388 flagellar basal-body rod protein FlgC
SCNpilot_expt_1000_bf_scaffold_1677_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6002..6259)
DNA (258bp) protein (86aa)
Aldo-keto reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EU96_9RHIZ
Aldo-keto reductase {ECO:0000313|EMBL:EYR82257.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_1677_curated_12
unknown

Not on your lists

6876..7040
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1677_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7084..7980
DNA (897bp) protein (299aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX00_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EYR82256.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7971..8420)
DNA (450bp) protein (150aa)
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EYR82255.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GCN5-like N-acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1K0_9RHIZ
Acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1677_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8417..8548)
DNA (132bp) protein (44aa)
Putative oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSK5_9RHIZ
Putative oxidoreductase {ECO:0000313|EMBL:EYR82254.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1677_curated_16
unknown

Not on your lists

8902..9453
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1677_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9483..10469
DNA (987bp) protein (329aa)
Putative oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCM8_9RHIZ rbh
Putative oxidoreductase {ECO:0000313|EMBL:EYR82253.1}; EC=1.1.1.179 {ECO:0000313|EMBL:EYR82253.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10608..11141)
DNA (534bp) protein (178aa)
Acetyltransferase Ttr n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUN4_9RHIZ
Acetyltransferase Ttr {ECO:0000313|EMBL:EYR83672.1}; EC=2.3.1.- {ECO:0000313|EMBL:EYR83672.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1677_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11156..11734)
DNA (579bp) protein (193aa)
Putative transcriptional regulator protein, LacI family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXD4_9RHIZ rbh
Putative transcriptional regulator protein, LacI family {ECO:0000313|EMBL:EYR83673.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1677_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11877..13127
DNA (1251bp) protein (417aa)
Major facilitator superfamily MFS-1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0G1_9RHIZ rbh
Major facilitator superfamily MFS-1 {ECO:0000313|EMBL:EYR83674.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Major facilitator superfamily MFS-1 rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13189..15021
DNA (1833bp) protein (611aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Elongation factor 4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVX0_9RHIZ rbh
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15267..15782)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD35_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83671.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1677_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15996..16814)
DNA (819bp) protein (273aa)
Putative hydrolase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSZ9_9RHIZ rbh
Putative hydrolase protein {ECO:0000313|EMBL:EYR83670.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
alpha/beta hydrolase family protein rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16907..17581
DNA (675bp) protein (225aa)
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
translation initiation factor IF-3 n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E3A6B rbh
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17808..18011
DNA (204bp) protein (68aa)
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
50S ribosomal protein L35 n=1 Tax=Rhizobium giardinii RepID=UPI00037D6813
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
SCNpilot_expt_1000_bf_scaffold_1677_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18051..18455
DNA (405bp) protein (135aa)
50S ribosomal protein L20 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D404_9RHIZ
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
SCNpilot_expt_1000_bf_scaffold_1677_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18544..19407
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ99_9RHIZ rbh
Mn2+-dependent serine/threonine protein kinase {ECO:0000313|EMBL:EYR83666.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1677_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19400..20485
DNA (1086bp) protein (362aa)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWD1_9RHIZ rbh
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pheS; phenylalanyl-tRNA synthetase, alpha subunit rbh
SCNpilot_expt_1000_bf_scaffold_1677_curated_29
unknown

Not on your lists

comp(22318..22578)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1677_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23211..23456)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3Z8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83662.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying items 1-30 of 62 in total

View Taxonomy