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SCNpilot_expt_1000_bf_scaffold_1677_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3470..4894)

Top 3 Functional Annotations

Value Algorithm Source
Putative rhizopine catabolism regulatory protein MocR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.4
  • Coverage: 474.0
  • Bit_score: 802
  • Evalue 1.70e-229
  • rbh
Putative rhizopine catabolism regulatory protein MocR {ECO:0000313|EMBL:EYR83680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.4
  • Coverage: 474.0
  • Bit_score: 802
  • Evalue 2.50e-229
transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase similarity KEGG
DB: KEGG
  • Identity: 61.8
  • Coverage: 477.0
  • Bit_score: 567
  • Evalue 5.10e-159
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1425
ATGGCATTGGATCGAAAAAGCACCAATTCAGAAGAAAATTCACGGACCAATCTATCGGACTGGTCGGCACTTATCCCCGTCCTGCCGGCCACAGGTCGGCGCACGCCGGCGCTCTACCGGGAACTGCGGCGGCTGATCGAGGCCGGCGACATCGCGCCCGGCAGCAAGCTGCCGCCCTCGCGGGATCTGGCGCGGCGTCTGCGGACCGCGCGCGGCAGCGTGGTTGCCGCCTTCGAGATGCTGATCGCGGAGGGCTATGCGGTTGCCCGCACCGGCGCGGGCACCTTCGTCGCCGACCGGGTGCCGAACATGCGGCCGGCCGCTCCCGTGGAGACGGCGGCGGCCGAACCGGCGATGCCGCTTCCCGGAACGCTCGGTGTCGCCATGGCCGACGCGCGCACGCTCAATCTCTTCCGCACCCTGCTTTCGCGCCATCTCGTCCGGCCCGGCCCGGAGCATTTCCAGTACGGCGATCCGCGCGGCGGGGCCGCGCTGCGCCAGGCCGTCGCCGCCTATCTCCGGCAGGCGCGCGGGGTGCGCTGCGAGGCGCGCTCCATCGTCATCACGACGGGCACGCAGCAGGGCATCGACCTCGTCATCCGCAGCGTGCTGTCGCCGGGCGAGCGGGTGATGCTGGAGGATCCGTGCTATCCCAGCGCCCGCGCCGCCTTCGCCGGCAACGGACTCGACCTTGCCGGCCTTGCGGTCGATGCGGAGGGCGCCGACATCGGCTTGGCGGTGCCGGGCGCCCGCGCGGTCTACGTGACCCCCTCGCACCAGTTCCCGCTCGGCGTGACCATGAGCATGCGCCGCCGCCTCGCCCTCATCGACTGGGCGCGGGAAACGGGCGGCTGGATCATCGAGGACGACTACGACAGCGAGTTCCGCTTCGCCGGCCCGCCGCTCGCCGCCATGCAGGGCATGGACGACAGCAGCCGCGTCATCTACCTCGGCACCTTCTCGAAGGTGCTCTTTCCCGGCCTCAGGCTCGGCTATGCCGTCATTCCCGATCCGCTCCTGGAGACGGTGGTGGCGCTGCGCGGCCGCAGCGACCGCAGCCCGCCGACGCTGGCCGAGGCGGCGCTGACCGACCTCATCCGCGAGGGTCACTTCGCCGCCCATCTGCGCCGCGCCCGGCGTAAGGCGCAGGCCGCGCGCGACGCGCTGGTCGCGGGGCTGGCCTCGGCACGAACCCTTTCGGTCGACGTTCCCGATCAGGGCCTGCACCTCGTCGCCCGCCTGCCGGCGCGGCTGGTGGATGTCGAGGCCGTCGAGATCGCCCGCAAAGCCGGGCTCGGCGCGCGCGCCCTGTCGCCGATGGCCGTCACCAACCCGCCCCGGCAGGGCCTTGTGATCGGCTTTTCCGGCTTCCCGCCGGAGGTCTTGCATGCGGCCGCGACGCGCTTTGCGGCCGCCATCGGCTAG
PROTEIN sequence
Length: 475
MALDRKSTNSEENSRTNLSDWSALIPVLPATGRRTPALYRELRRLIEAGDIAPGSKLPPSRDLARRLRTARGSVVAAFEMLIAEGYAVARTGAGTFVADRVPNMRPAAPVETAAAEPAMPLPGTLGVAMADARTLNLFRTLLSRHLVRPGPEHFQYGDPRGGAALRQAVAAYLRQARGVRCEARSIVITTGTQQGIDLVIRSVLSPGERVMLEDPCYPSARAAFAGNGLDLAGLAVDAEGADIGLAVPGARAVYVTPSHQFPLGVTMSMRRRLALIDWARETGGWIIEDDYDSEFRFAGPPLAAMQGMDDSSRVIYLGTFSKVLFPGLRLGYAVIPDPLLETVVALRGRSDRSPPTLAEAALTDLIREGHFAAHLRRARRKAQAARDALVAGLASARTLSVDVPDQGLHLVARLPARLVDVEAVEIARKAGLGARALSPMAVTNPPRQGLVIGFSGFPPEVLHAAATRFAAAIG*