ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1677_curated_21

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 13189..15021

Top 3 Functional Annotations

Value Algorithm Source
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.4
  • Coverage: 610.0
  • Bit_score: 1187
  • Evalue 0.0
Elongation factor 4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVX0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.2
  • Coverage: 610.0
  • Bit_score: 1184
  • Evalue 0.0
  • rbh
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA similarity KEGG
DB: KEGG
  • Identity: 94.4
  • Coverage: 610.0
  • Bit_score: 1147
  • Evalue 0.0
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1833
ATGGCGCGCATGAGCACCAACAATTCGACGCCCCTCGACCATATCCGCAATTTCTCGATCGTCGCCCATATCGACCACGGCAAGTCGACGCTGGCCGACCGGCTGATCCAGTCGACCGGCGGCCTGGCCGACCGCGAGATGTCGGAACAGGTCCTCGACAACATGGACATCGAGCGCGAGCGCGGCATCACCATCAAGGCCCAGACCGTGCGCCTGCACTACAAGGCGAACGACGGCGAGACCTATGTGCTGAACCTCATCGACACGCCCGGCCATGTCGACTTCGCCTACGAGGTCTCGCGATCGCTGTCGGCCTGCGAGGGCTCGCTGCTGGTGGTCGACGCCAGCCAGGGCGTGGAAGCCCAGACGCTCGCCAACGTCTACCAGGCGATCGACAACAACCACGAGCTCGTTATCGTCCTCAACAAGATCGACCTTCCCGCAGCCGAGCCCGACCGCATCAGGGAGCAGATCGAGGAGGTGATCGGCATCGATGCCTCCGACGCCGTGCTGATCTCGGCCAAGACGGGCCTCGGCATTCCCGACGTGCTGGAAGCCATTGTCAAGCGCCTGCCCGCGCCGAAGAGCGAGGGCGGCGAGAAGGCGCCGCTGAAGGCGCTGCTGGTCGATAGCTGGTACGACACCTATCTCGGCGTCATGGTTCTCGTGCGCGTCATCGAGGGCCGGCTCTCCAAGGGCCAGACCGTGCGCATGATGGGCACGGACGCGAAATACACCGTCGAGCGCGTCGGCGTGCTGACGCCGAAGATGGTGGCGATGGACAGCCTCGGCCCGGGCGAGATCGGCTTCATCACCGCCTCGATCAAGGAAGTGGCCGATACCCGCGTCGGCGACACGATCACCGAGGACAAGCGCCCGACGGCAAAGGCCCTGCCGGGCTTCAAGCCGGCCCAGCCGGTCGTCTTCTGCGGCCTCTTCCCGGTCGATGCCGCCGATTTCGAGGACCTGCGCTCGGCCATGGGCAAGCTGCGCCTCAACGACGCCTCGTTCTCCTTCGAAATGGAAAGCTCGGCCGCCCTCGGCTTCGGCTTCCGCTGCGGCTTCCTCGGCCTCCTGCATCTGGAAATCATCCAGGAGCGCCTGGAGCGCGAATTCGACCTCGACCTGATCGCGACCGCGCCGTCGGTCGTCTACAAGCTCTTCATGACCGACGGCACGGAGCGCGAGCTGCACAACCCGGCCGACATGCCCGACGTCGTGAAGATCGCGGAAATCCACGAGCCCTGGATCCGCGCGACGATCCTGACGCCGGACGATTATCTCGGCGGCATCCTGAAGCTCTGCCAGGACCGGCGCGGCATCCAGGTGGAACTCACCTATGTCGGCACACGCGCCATGCTGACCTACGACCTGCCGCTCAACGAAGTCGTCTTCGACTTCTACGACCGCCTGAAGTCGATTTCCAAGGGCTATGCCTCCTTCGACTACCAGATCACCGACCACAAGGAAGGGCATCTCGTAAAAATGTCGATCCTGGTGAACGGCGAGCCGGTCGATGCGCTCTCCATGATGGTGCACCGCATGGCCGCCGAAAAGCGCGGCCGCGACATGTGCGAGAAGCTCAAGGAGCTGATCCCCAAGCACATGTTCAAGATCCCGATCCAGGCCGCCATCGGCGGCAACGTGATCGCCCGCGAGACGATCTCGGCGCTGCGCAAGGACGTGACCGCCAAGTGCTACGGGGGCGACGCCACCCGCAAGCGCAAGCTGCTCGACAAGCAGAAGGCCGGCAAGAAGCGCATGCGCCAGTTCGGCAAGGTCGAAATCCCGCAGGAAGCCTTCATCGCGGCGCTCAAGATGGGCGACGAATAG
PROTEIN sequence
Length: 611
MARMSTNNSTPLDHIRNFSIVAHIDHGKSTLADRLIQSTGGLADREMSEQVLDNMDIERERGITIKAQTVRLHYKANDGETYVLNLIDTPGHVDFAYEVSRSLSACEGSLLVVDASQGVEAQTLANVYQAIDNNHELVIVLNKIDLPAAEPDRIREQIEEVIGIDASDAVLISAKTGLGIPDVLEAIVKRLPAPKSEGGEKAPLKALLVDSWYDTYLGVMVLVRVIEGRLSKGQTVRMMGTDAKYTVERVGVLTPKMVAMDSLGPGEIGFITASIKEVADTRVGDTITEDKRPTAKALPGFKPAQPVVFCGLFPVDAADFEDLRSAMGKLRLNDASFSFEMESSAALGFGFRCGFLGLLHLEIIQERLEREFDLDLIATAPSVVYKLFMTDGTERELHNPADMPDVVKIAEIHEPWIRATILTPDDYLGGILKLCQDRRGIQVELTYVGTRAMLTYDLPLNEVVFDFYDRLKSISKGYASFDYQITDHKEGHLVKMSILVNGEPVDALSMMVHRMAAEKRGRDMCEKLKELIPKHMFKIPIQAAIGGNVIARETISALRKDVTAKCYGGDATRKRKLLDKQKAGKKRMRQFGKVEIPQEAFIAALKMGDE*