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SCNpilot_expt_1000_bf_scaffold_1677_curated_26

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 18051..18455

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L20 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D404_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.5
  • Coverage: 134.0
  • Bit_score: 261
  • Evalue 4.10e-67
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.5
  • Coverage: 134.0
  • Bit_score: 261
  • Evalue 5.80e-67
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 similarity KEGG
DB: KEGG
  • Identity: 93.3
  • Coverage: 134.0
  • Bit_score: 250
  • Evalue 3.90e-64

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 405
ATGGCACGTGTAAAACGCGGCGTTACTTCCCACGCCAAGCACAAGAAGACGCTGAAGGCAGCCAAGGGCTTCTACGGCCGCCGCAAGAACACCATCCGCGCCGCCAAGGCAGCGGTTGATCGTTCCAAGCAGTTCGCCTACCGCGACCGCAAGGTCAACAAGCGCAACTTCCGCGCTCTGTGGATCCAGCGCATCAACGCTGCCGTCCGCGAGCACGGCCTGACCTATGGCCGTTTCATCGACGGCCTCAACAAGGCTGGCATCGAAGTCGACCGCAAGGTGCTTTCGGACATGGCGATCCATGAGACCGCAGCTTTCGGCGCGCTCGTCGCAGCCGCCAAGAAGGCTCTGGAATACCTCAAGGACGCCGGCACGAAGAACGAGTTTGAGACCGCCGTCAACTAA
PROTEIN sequence
Length: 135
MARVKRGVTSHAKHKKTLKAAKGFYGRRKNTIRAAKAAVDRSKQFAYRDRKVNKRNFRALWIQRINAAVREHGLTYGRFIDGLNKAGIEVDRKVLSDMAIHETAAFGALVAAAKKALEYLKDAGTKNEFETAVN*