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SCNpilot_expt_1000_bf_scaffold_1677_curated_24

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 16907..17581

Top 3 Functional Annotations

Value Algorithm Source
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.2
  • Coverage: 224.0
  • Bit_score: 390
  • Evalue 1.40e-105
translation initiation factor IF-3 n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E3A6B similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 197.0
  • Bit_score: 339
  • Evalue 2.60e-90
  • rbh
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 similarity KEGG
DB: KEGG
  • Identity: 86.3
  • Coverage: 197.0
  • Bit_score: 337
  • Evalue 2.40e-90
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 675
GTGATTTTTTCCACGCGACATGCTATTGACTTCGCAAGCGTGATCAACACATTGCCGACAAACGCCGCATTTCCGGCAAAACGGCCCGATCGTCGCGCAGATTCAGACCAGTCGAAACAGTTCGAGGAGAACACGACCATTCGCAGACCCTTCAAAGCGGAAGCCCCCGTCAAAGACGGCCCGCGTTCCAACAAGGAAATCCGGATCCCTCGCATCCAGCTCATCGACGCCGAAGGCACCAACCACGGCATCGTTCCCACCGATCAGGCGCTCCGCATGGCTGAAGAAGCCGGCCTCGATCTCGTGGAGATTTCACCGAACTCCGAACCGCCCGTCTGCAAGATTCTTGACCTCGGCAAGCTGAAATACGCCAACCAGAAGAAGGCGGCCGAGGCGCGCAAGAAGCAGAAGATCGTCGAGATCAAGGAAATCAAGATGCGTCCGAACATCGACACCCATGACTATGAGGTGAAGATGAAGGCGATGAACCGGTTCTTCGACGAGGGCGACAAGGTCAAGGTGACCCTGAAGTTCCGCGGCCGCGAGATGGCCCACCAGGAACTCGGCATGAAGCTGCTCCAGCAGGTCAAGGAAGACACCGTGGCCATCGCCAAGGTCGAGGCCGAGCCGAAGCTCGAAGGCCGCCAGATGATGATGGTGCTCGCCCCGCGGTGA
PROTEIN sequence
Length: 225
VIFSTRHAIDFASVINTLPTNAAFPAKRPDRRADSDQSKQFEENTTIRRPFKAEAPVKDGPRSNKEIRIPRIQLIDAEGTNHGIVPTDQALRMAEEAGLDLVEISPNSEPPVCKILDLGKLKYANQKKAAEARKKQKIVEIKEIKMRPNIDTHDYEVKMKAMNRFFDEGDKVKVTLKFRGREMAHQELGMKLLQQVKEDTVAIAKVEAEPKLEGRQMMMVLAPR*