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SCNpilot_expt_1000_bf_scaffold_2774_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3366..4445)

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV59_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.0
  • Coverage: 359.0
  • Bit_score: 656
  • Evalue 1.50e-185
  • rbh
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.0
  • Coverage: 359.0
  • Bit_score: 656
  • Evalue 2.20e-185
spermidine/putrescine ABC transporter ATPase subunit; K02052 putative spermidine/putrescine transport system ATP-binding protein similarity KEGG
DB: KEGG
  • Identity: 77.6
  • Coverage: 361.0
  • Bit_score: 548
  • Evalue 1.40e-153
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1080
GTGACATCCGCCTCCACGAACGACATCGAGTTCCGGTTGGTGACCAAGCGCTATGGCGCGGTGACCGCGGTCTCCGAGATAAACCTTTGCGTGCCGAAGGGCGCCTTCGTCGCGCTGCTCGGCCCGTCCGGCTGCGGCAAGACGACCTGCCTTCGCATGATCGGCGGCTTCGAGCAGCCGAGCGAGGGCGAGGTGCTGATATCAGGCACTATCGCCAACGGCGTGCCGGCCTATCGCCGCCCGGTCAACATGGTGTTCCAGCAATATGCGCTCTTCCCGCATTTCGACGTGGAGAAGAACGTCGCCTACGGCCTGAAGCAGCTTCGCCCGAGGCTGCCGGCCGGGGAGATATCCCGCCGCGTCGGCGAGGCGCTGGAGATGGTGCGGCTTTCCGGCTTCGCCCGGCGCCGTATCCATGAAATGTCCGGCGGCCAGCAGCAGCGCGTGGCGCTCGCCCGCGCCCTCGTCAACAAGCCCTCCGTGCTTCTCCTCGACGAGCCGCTGGCGGCGCTCGACAAGAAGCTGCGCACCGCCATGCAGATCGAGCTGCAGACGCTCCAGCGCGACCTCGGCATCACCTTCGTGCTCGTCACCCACGACCAGGAGGAGGCGCTGTCGATGAGCGACCTCGTCTGCGTGATGAGCGCCGGCCGCATCCGCCAGCTCGCCACGCCCCAGGAGGTCTACGACCGTCCGGCCGATCTCTTCGTCGCCGATTTCGTCGGCAAGACCAACCGTTTCGACGGCACGCTGGAGGCCGGCGGCACCATCCGCCTCGGCAACGGCACGGCCCTGCCCGCCCCGCGCGGCGATCTTCACCTGGGCGCCGTCACCGTGGCGCTCCGCCCGGAGGCGATCCGCCTTGCGCGCGGCGGAGCAGGCGCGACGACGCTGGAGGGCACCGTCACCCACCGCATCTTCCTCGGCTCGGCCGCCGAATATTCCATCGCCATCGACGGGCTGGGCGACCTCCTCGTCACCGCCGAACGCCATAACCAGTCGGAAAACGACCTCGTCGCGCCGGGCGAACGGGTCGCAATCAGCTTCGATCCCGGTACAGCGCATATCTTTCCGGCCTGA
PROTEIN sequence
Length: 360
VTSASTNDIEFRLVTKRYGAVTAVSEINLCVPKGAFVALLGPSGCGKTTCLRMIGGFEQPSEGEVLISGTIANGVPAYRRPVNMVFQQYALFPHFDVEKNVAYGLKQLRPRLPAGEISRRVGEALEMVRLSGFARRRIHEMSGGQQQRVALARALVNKPSVLLLDEPLAALDKKLRTAMQIELQTLQRDLGITFVLVTHDQEEALSMSDLVCVMSAGRIRQLATPQEVYDRPADLFVADFVGKTNRFDGTLEAGGTIRLGNGTALPAPRGDLHLGAVTVALRPEAIRLARGGAGATTLEGTVTHRIFLGSAAEYSIAIDGLGDLLVTAERHNQSENDLVAPGERVAISFDPGTAHIFPA*