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SCNpilot_expt_1000_bf_scaffold_2774_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2774_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..283)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ3_9RHIZ
Dehydrogenase {ECO:0000313|EMBL:EYR82081.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2774_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(287..1111)
DNA (825bp) protein (275aa)
Putrescine transport system permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2K9_9RHIZ rbh
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:EYR82080.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1111..1977)
DNA (867bp) protein (289aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTK0_9RHIZ rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR82079.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2174..3031)
DNA (858bp) protein (286aa)
Spermidine/putrescine-binding periplasmic protein PotD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDN5_9RHIZ rbh
Spermidine/putrescine-binding periplasmic protein PotD {ECO:0000313|EMBL:EYR82078.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Substrate-binding periplasmic protein precursor rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3366..4445)
DNA (1080bp) protein (360aa)
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV59_9RHIZ rbh
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter ATPase subunit; K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4640..5437
DNA (798bp) protein (266aa)
Response regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ7_9RHIZ rbh
Response regulator {ECO:0000313|EMBL:EYR82076.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LuxR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5727..6203)
DNA (477bp) protein (159aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLG4_9RHIZ
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|SAAS:SAAS00106234}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|SAAS:SAAS00106234};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
riboflavin synthase subunit beta; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
SCNpilot_expt_1000_bf_scaffold_2774_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6543..6668)
DNA (126bp) protein (42aa)
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5Q2_9RHIZ
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:EYR82074.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EYR82074.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2774_curated_9
unknown

Not on your lists

7363..7611
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2774_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7608..8390)
DNA (783bp) protein (261aa)
ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENB8_9RHIZ rbh
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR82073.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter, permease component rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8387..9277)
DNA (891bp) protein (297aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQY5_9RHIZ rbh
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EYR82072.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9362..10465)
DNA (1104bp) protein (368aa)
Putative periplasmic binding ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHT0_9RHIZ rbh
ABC-type Fe3+ transport system periplasmic component {ECO:0000313|EMBL:EYR77701.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative periplasmic binding ABC transporter rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10567..11445)
DNA (879bp) protein (293aa)
Transcriptional regulator RpiR family {ECO:0000313|EMBL:EYR77702.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UBD6_SINMW
SCNpilot_expt_1000_bf_scaffold_2774_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11639..12403
DNA (765bp) protein (255aa)
Putative N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EYR77703.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-formylglutamate amidohydrolase rbh
N-formylglutamate amidohydrolase n=1 Tax=Rhizobium mongolense RepID=UPI0003B3B508 rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12536..13045
DNA (510bp) protein (170aa)
TRAP-type mannitol/chloroaromatic compound transport system small permease component {ECO:0000313|EMBL:EYR77704.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000369138F
tripartite ATP-independent periplasmic transporter DctQ
SCNpilot_expt_1000_bf_scaffold_2774_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13042..14364
DNA (1323bp) protein (441aa)
Sialic acid TRAP transporter permease protein SiaT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVN9_9RHIZ rbh
Sialic acid TRAP transporter permease protein SiaT {ECO:0000313|EMBL:EYR77705.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dctM; TRAP dicarboxylate transporter subunit DctM rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14994..15539
DNA (546bp) protein (182aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLI5_9RHIZ rbh
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:EYR77706.1}; EC=1.1.1.42 {ECO:0000313|EMBL:EYR77706.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TRAP dicarboxylate transporter subunit DctP (EC:1.1.1.42) rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15612..16982
DNA (1371bp) protein (457aa)
Glutamine synthetase GlnA {ECO:0000313|EMBL:EYR77707.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EYR77707.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glnA2; protein GlnA; K01915 glutamine synthetase [EC:6.3.1.2] rbh
GlnA2 protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A8F7_RHIFH rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17184..18563
DNA (1380bp) protein (460aa)
Succinate-semialdehyde dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX13_9RHIZ rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EYR77708.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR77708.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ssdA; succinate-semialdehyde dehydrogenase (EC:1.2.1.79) rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18569..19714
DNA (1146bp) protein (382aa)
NAD-dependent methanol dehydrogenase Mdh n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFP5_9RHIZ rbh
NAD-dependent methanol dehydrogenase Mdh {ECO:0000313|EMBL:EYR77709.1}; EC=1.1.1.244 {ECO:0000313|EMBL:EYR77709.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19932..20648
DNA (717bp) protein (239aa)
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:EYR77710.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036B98D1 rbh
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20891..22411
DNA (1521bp) protein (507aa)
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS75_9RHIZ rbh
Chemoreceptor McpA {ECO:0000313|EMBL:EYR77711.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
methyl-accepting chemotaxis protein McpB; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_2774_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22462..23655)
DNA (1194bp) protein (398aa)
Cellulase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPP0_9RHIZ rbh
Cellulase family protein {ECO:0000313|EMBL:EYR77712.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycoside hydrolase family 5 rbh
SCNpilot_expt_1000_bf_scaffold_2774_curated_24
unknown

Not on your lists

24461..24844
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2774_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25421..25759
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA79_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77714.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 25 items

View Taxonomy