name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2774_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..283)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ3_9RHIZ
Dehydrogenase {ECO:0000313|EMBL:EYR82081.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(287..1111)
|
Putrescine transport system permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2K9_9RHIZ
rbh
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:EYR82080.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1111..1977)
|
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTK0_9RHIZ
rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR82079.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2174..3031)
|
Spermidine/putrescine-binding periplasmic protein PotD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDN5_9RHIZ
rbh
Spermidine/putrescine-binding periplasmic protein PotD {ECO:0000313|EMBL:EYR82078.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Substrate-binding periplasmic protein precursor
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3366..4445)
|
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV59_9RHIZ
rbh
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter ATPase subunit; K02052 putative spermidine/putrescine transport system ATP-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4640..5437
|
Response regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ7_9RHIZ
rbh
Response regulator {ECO:0000313|EMBL:EYR82076.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LuxR family transcriptional regulator
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5727..6203)
|
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLG4_9RHIZ
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|SAAS:SAAS00106234}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|SAAS:SAAS00106234};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
riboflavin synthase subunit beta; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6543..6668)
|
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5Q2_9RHIZ
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:EYR82074.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EYR82074.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K02052 putative spermidine/putrescine transport system ATP-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_9
unknown
|
Not on your lists |
7363..7611
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7608..8390)
|
ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENB8_9RHIZ
rbh
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR82073.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter, permease component
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8387..9277)
|
ABC-type transporter, integral membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQY5_9RHIZ
rbh
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EYR82072.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9362..10465)
|
Putative periplasmic binding ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHT0_9RHIZ
rbh
ABC-type Fe3+ transport system periplasmic component {ECO:0000313|EMBL:EYR77701.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative periplasmic binding ABC transporter
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10567..11445)
|
Transcriptional regulator RpiR family {ECO:0000313|EMBL:EYR77702.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UBD6_SINMW
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11639..12403
|
Putative N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EYR77703.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-formylglutamate amidohydrolase
rbh
N-formylglutamate amidohydrolase n=1 Tax=Rhizobium mongolense RepID=UPI0003B3B508
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12536..13045
|
TRAP-type mannitol/chloroaromatic compound transport system small permease component {ECO:0000313|EMBL:EYR77704.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000369138F
tripartite ATP-independent periplasmic transporter DctQ
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13042..14364
|
Sialic acid TRAP transporter permease protein SiaT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVN9_9RHIZ
rbh
Sialic acid TRAP transporter permease protein SiaT {ECO:0000313|EMBL:EYR77705.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dctM; TRAP dicarboxylate transporter subunit DctM
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14994..15539
|
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLI5_9RHIZ
rbh
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:EYR77706.1}; EC=1.1.1.42 {ECO:0000313|EMBL:EYR77706.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TRAP dicarboxylate transporter subunit DctP (EC:1.1.1.42)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15612..16982
|
Glutamine synthetase GlnA {ECO:0000313|EMBL:EYR77707.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EYR77707.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GlnA2 protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A8F7_RHIFH
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17184..18563
|
Succinate-semialdehyde dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX13_9RHIZ
rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EYR77708.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR77708.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ssdA; succinate-semialdehyde dehydrogenase (EC:1.2.1.79)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18569..19714
|
NAD-dependent methanol dehydrogenase Mdh n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFP5_9RHIZ
rbh
NAD-dependent methanol dehydrogenase Mdh {ECO:0000313|EMBL:EYR77709.1}; EC=1.1.1.244 {ECO:0000313|EMBL:EYR77709.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative dehydrogenase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19932..20648
|
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:EYR77710.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036B98D1
rbh
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20891..22411
|
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS75_9RHIZ
rbh
Chemoreceptor McpA {ECO:0000313|EMBL:EYR77711.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
methyl-accepting chemotaxis protein McpB; K03406 methyl-accepting chemotaxis protein
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22462..23655)
|
Cellulase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPP0_9RHIZ
rbh
Cellulase family protein {ECO:0000313|EMBL:EYR77712.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycoside hydrolase family 5
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_24
unknown
|
Not on your lists |
24461..24844
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2774_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25421..25759
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA79_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77714.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|