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SCNpilot_expt_1000_bf_scaffold_2774_curated_13

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(10567..11445)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator RpiR family {ECO:0000313|EMBL:EYR77702.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.2
  • Coverage: 292.0
  • Bit_score: 546
  • Evalue 2.00e-152
RpiR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 79.6
  • Coverage: 284.0
  • Bit_score: 468
  • Evalue 2.00e-129
Transcriptional regulator, RpiR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UBD6_SINMW similarity UNIREF
DB: UNIREF100
  • Identity: 79.6
  • Coverage: 284.0
  • Bit_score: 468
  • Evalue 6.30e-129

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 879
ATGACGGTGTCGGATGTGATCAATGCCCACTTCGATGCGCTGACGCGTGCCGAAAGGCAGCTGGCCACATCGCTGCTCGACAATTATCCCGTCTCCGGCCTCGGCTCGATCACGACGGTCGCGGAAAACGCCGGCGTGTCGACGCCGACGGTCGCGCGCATGGTGCAGAAGCTCGGTTTCCGCGGCTTTCCGGACTTCCAGGCGCGCCTGCATCACGAGCTGGAAGCCACGCTGACCAGCCCGATCACCAAGCACGACCGCTGGGCGGCGAAAGCACCGGGCACCCATATCCTCAACCGCTTCGCCGACGCGATCATGACCAACCTGCGCCAGACGCTCGCGCATGTGGAGACCGCCGAATTCGACGGCGCCAGCGCCCTTCTCGCCGACCGCCAGCGCAGCATCTACATCATCGGCGGCCGCATCACGAAGGCGCTCGCCGACTATCTCTTCACCCATCTCCAGGTCATCCGCCCGAACGTCACCCAGATCGCCTCCAATCCGAGTTCCTGGCCGCATTACGTGCTGAACATGAAGGCCGGCGACGTGCTCGTCATCTTCGACATCCGCCGCTACGAGCAGGAGATGGAGACGCTGGGGCGCGTGGCCCGCGAGCGCGGCGTGCAGATCGTGCTGTTCACCGACCAGTGGGCCTCGCCCGTCGCCAAGGTCGCGGCGAAGGTGTTCCGGGTCCATATCGAGGCGCCGTCGGCCTGGGACTCGTCCGTCGTGACGCTGTTCATCGTCGAGGCGCTGATCGAAGCCGTCCAGAGTTCGGGCTGGGAGGAAACCAGCGACCGAATGAAGACGCTGGAGGGTCTTTTCGAGGCCAGCCGGCTTTTTCGCAAGCCCCGGCCGGAATTTCCCGGCAAGACCTGA
PROTEIN sequence
Length: 293
MTVSDVINAHFDALTRAERQLATSLLDNYPVSGLGSITTVAENAGVSTPTVARMVQKLGFRGFPDFQARLHHELEATLTSPITKHDRWAAKAPGTHILNRFADAIMTNLRQTLAHVETAEFDGASALLADRQRSIYIIGGRITKALADYLFTHLQVIRPNVTQIASNPSSWPHYVLNMKAGDVLVIFDIRRYEQEMETLGRVARERGVQIVLFTDQWASPVAKVAAKVFRVHIEAPSAWDSSVVTLFIVEALIEAVQSSGWEETSDRMKTLEGLFEASRLFRKPRPEFPGKT*