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SCNpilot_expt_1000_bf_scaffold_2774_curated_10

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(7608..8390)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENB8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.8
  • Coverage: 258.0
  • Bit_score: 488
  • Evalue 5.20e-135
  • rbh
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR82073.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.8
  • Coverage: 258.0
  • Bit_score: 488
  • Evalue 7.30e-135
putative ABC transporter, permease component similarity KEGG
DB: KEGG
  • Identity: 91.0
  • Coverage: 256.0
  • Bit_score: 470
  • Evalue 2.70e-130
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 783
ATGAAGAAGTTCTGGGCCTGGGGCGCCCTCATCGTCGGGCTGCTCTATTTCATCCTGCCGCTCCTCGGCATGACGAACTTCTCGCTGAAGATGCGCCGCGGCGTCTATTCCTTCGATGCCTATGCGGTCGTCCTCGGCGACCCGCGCTTCCAGGAGACCTTCACCTATTCCGTCGTGATGGCGCTGTTCACCATCGCCTTCGGGGTGCTCCTCGTCGTGCCGACCGCCTACTGGGTTCGCCTCAAGCTGCCGGGCCTTCGGCCCTATGTCGAGTTCGTCACACTGCTGCCGCTGGTCATTCCCGCCATCGTCATCGTCTTCGGCTATATCCGGCTCTACAACACCTCGAGCTGGCTGCCGCTGACGGGCTCGATCACCGGCACCAACATCCTCCTGATGTTCGGCTATGCCACGCTGTCGCTGCCCTACATGTACCGCGCCGTCGACACGGGCCTTCGCTCCATCGACATCACCACGCTGACGGAGGCCGCCCAGAGTCTGGGCGCCGGCTGGACGACGATCCTCACGCGCATCATCCTGCCGAACGTGCTCGTCGCGGTCCTGTCGGGCGCCTTCCTGACCTTCGCCATCGTCATCGGCGAGTTCACCATGGCCGCCCTCCTCAACCGCCCGGCCTTCGGCCCCTACATGCAGCTTCTTGGCGCCAACCGGGCCTATGAGCCGGCCGCGCTCGCCGTGATCGCCTTCGCCATCACCTGGGGCTGCCTCGGCCTGATCCAGCTTGTCTCCCGCTTCCAGAAGGGCGCGCAAAGCCCCGTCTAA
PROTEIN sequence
Length: 261
MKKFWAWGALIVGLLYFILPLLGMTNFSLKMRRGVYSFDAYAVVLGDPRFQETFTYSVVMALFTIAFGVLLVVPTAYWVRLKLPGLRPYVEFVTLLPLVIPAIVIVFGYIRLYNTSSWLPLTGSITGTNILLMFGYATLSLPYMYRAVDTGLRSIDITTLTEAAQSLGAGWTTILTRIILPNVLVAVLSGAFLTFAIVIGEFTMAALLNRPAFGPYMQLLGANRAYEPAALAVIAFAITWGCLGLIQLVSRFQKGAQSPV*