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SCNpilot_expt_1000_bf_scaffold_2774_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(287..1111)

Top 3 Functional Annotations

Value Algorithm Source
Putrescine transport system permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2K9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.1
  • Coverage: 274.0
  • Bit_score: 491
  • Evalue 6.50e-136
  • rbh
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:EYR82080.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.1
  • Coverage: 274.0
  • Bit_score: 491
  • Evalue 9.10e-136
ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 274.0
  • Bit_score: 459
  • Evalue 8.60e-127
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 825
ATGCGCGCGCTGATAACCTCCGTCTACCTGTTCCTCTACGCACCCATCGCGCTGGTCGTGCTGTTCTCCTTCAATGCGGGGCGCAATGCCAGCGAGTTCACCGGCTTCTCGACGCAATGGTACGGCAAGGCGCTCGCCAATCCGTTCCTCGTCGCCGCGCTGCAGAACAGCCTGATCATCGCGTTTGCCAGCGCCACGCTCGCCGCCGTCTTCGGCACCATGGCCGCCCTTGGCGTGGAACGCCTCGGCGCGCGCACCCGCGCCCTTTTCGACGGCCTGCTCGCCGCCGCCATCGTCGTACCGGGCGTCGTCATCGGCATCGCGACGCTGGTCGCGCTCGTCGCGGTCTTCGGCGTCGTCAACCCGGCCATCGCCTCGCTCTGGCCCGGCGACAAGCCGCCGCAGCTCGGCCTCGGCTACGGCTCTATCATCGCCGCGCACGGGCTCTTCACCATGGCGCTCGTGACGATGATCGTGAAGGCGCGCATCGCCACGCTCGGCCGCGACATCGTCGAGGCCTCGGCCGATCTCTACGCCACGCCCCTCACCACCTTCCGCGATATCGTCCTGCCGCAGATCCTGCCCTCGGTGCTGGCCGGCTTCCTGCTCGCCTTCACCTTCTCCTTCGACGATTTCATCGTGGCCTTCTTCGTCGCCGGCTCCAAGACGACGCTGCCGATCTACGTCTTCGCCTCGATCCGCCGCGGCGTGACACCGGAGGTCAACGCCATCGCGACGATGGTGCTGGTCGCCTCGCTCTTCCTCATCCTCGTCGCCCGCCTCCTCATGCGGGAAAAGAAAACGAAATCGCCTGCCGGAGAATAA
PROTEIN sequence
Length: 275
MRALITSVYLFLYAPIALVVLFSFNAGRNASEFTGFSTQWYGKALANPFLVAALQNSLIIAFASATLAAVFGTMAALGVERLGARTRALFDGLLAAAIVVPGVVIGIATLVALVAVFGVVNPAIASLWPGDKPPQLGLGYGSIIAAHGLFTMALVTMIVKARIATLGRDIVEASADLYATPLTTFRDIVLPQILPSVLAGFLLAFTFSFDDFIVAFFVAGSKTTLPIYVFASIRRGVTPEVNAIATMVLVASLFLILVARLLMREKKTKSPAGE*