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SCNpilot_expt_1000_bf_scaffold_2774_curated_15

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 12536..13045

Top 3 Functional Annotations

Value Algorithm Source
TRAP-type mannitol/chloroaromatic compound transport system small permease component {ECO:0000313|EMBL:EYR77704.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.7
  • Coverage: 168.0
  • Bit_score: 314
  • Evalue 7.20e-83
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000369138F similarity UNIREF
DB: UNIREF100
  • Identity: 64.3
  • Coverage: 168.0
  • Bit_score: 228
  • Evalue 4.90e-57
tripartite ATP-independent periplasmic transporter DctQ similarity KEGG
DB: KEGG
  • Identity: 61.6
  • Coverage: 164.0
  • Bit_score: 208
  • Evalue 1.30e-51

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
ATGCCTGATTTCATCAAGACCTATGTGCGCGTCGTCGACACGTTCAACCGGCGTGTCGGCATTTTTGCGATGTACCTGATTTTCGCGATGTTCGCGATCCTGCTTTATTCGTCGCTTTCGAAGGCCTTCCACCTGCCGGCGAACTGGACGCTGGAATCGGCGCAGTTCACCATGGCGGCCTATTACATGCTGGGCGGCGCCTTCGCCATGCAGACCGGCGACCACGTCCGCATGGACCTCTTCTACGGCACCTGGTCGGCAAGGAAGCGGGCGGCCTTCGACACGGTCACGGCCGTGGCGCTGATCGTGTTCCTCGGCTTCATGCTTTATGGCGGCATCGCCAGCACGACCTATGCCATCCAGTTCAAGGAAAAGAGCTTTACCGCCTGGGCGCCCTACATGGCGCCGATCAAGATCGTCATGACCTTCGGTATCGTGATGATGCTGGCGCAGGCCACCTCCTCGCTCTTCAAGGATATCGCCGAGTTGCGGGGAAGGCCCATCGAATGA
PROTEIN sequence
Length: 170
MPDFIKTYVRVVDTFNRRVGIFAMYLIFAMFAILLYSSLSKAFHLPANWTLESAQFTMAAYYMLGGAFAMQTGDHVRMDLFYGTWSARKRAAFDTVTAVALIVFLGFMLYGGIASTTYAIQFKEKSFTAWAPYMAPIKIVMTFGIVMMLAQATSSLFKDIAELRGRPIE*