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SCNpilot_expt_1000_bf_scaffold_3591_curated_24

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 20696..21577

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional activator rhaR L-rhamnose operon transcriptional activator rhaR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC42_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 293.0
  • Bit_score: 504
  • Evalue 6.10e-140
  • rbh
Transcriptional regulator AraC family {ECO:0000313|EMBL:EYR78710.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.0
  • Coverage: 293.0
  • Bit_score: 504
  • Evalue 8.50e-140
pobr1; L-rhamnose operon transcriptional activator RhaR similarity KEGG
DB: KEGG
  • Identity: 76.1
  • Coverage: 289.0
  • Bit_score: 457
  • Evalue 2.70e-126
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 882
ATGATTACCCGCAACGACGTTCCAGCCTTCTTCGTCTACGGCGAGCCGAGCCGCGCGCTCGACGTCGGTTTCCTGCATGTCGAAACCGTCATGGAACGCAAGAGCTTGCATTTCGGCCGCGTCGCGCCGCACAAGCATCCGCTGATGGGGCAGGTCACCTACTGGTTCAAGGGCGGCGGGCGCTACCGGATCGAGGATCGCACTTGGAATTTTTCCGCTCCCGCGATCAGTTTCGTGCCGAGCAACGTGGTGCACGGCTTCGATGTCGGCGACGAGGCGGACGCCATCGTCGTCTCGATCTCCGACGACCTGCTTCGCGTCATGGCGGGGCAGGTCGACCTTGCACTGGATGCGCCGATGCTGCTTTCCGGCGAGGCGGGCACGCCCGGCTGGACCAGGATCGGCACGCTGCTCGGCATGGTGATGGAGGAATATCTCGGCGGGGCGGCGGCCAGCGAGCGGGTGCTGGCGGGGCTTGTCGGAGTCGTGCTGTCGCTGATGGCCCGGCTCGGCGGCAATGTCGGCTTCGAAGCCGCCTCGCCGGCGGTGGCGCTCGGGCTGGAACTGCGCCGCGCCATCGACCGTCACTATCGCGAGGACTGGCCCGTCGGCCGCTATGTCGAGCGGCTGGCGACGACGCCGCANNNNNNNNNNNNGGCGGCGCGCACCGTGTTCGGTCAGACGGTGAAGGACATGGTGCTGGAGCGGCGCTTGCTGGAGGCACGGCGCCTGCTGCGCTTCACCATCCGCCCGGTGGAGGATATCGGCCGGGAGATCGGCTTCGAGGACCCGGCCTATTTCTCGCGCTTCTTCCGCAGGCGTACGGGACTGTCGCCCACGCAGTGGCGCCGGCAGAATTCGGAGGCTGCCGGCACCGGCTGA
PROTEIN sequence
Length: 294
MITRNDVPAFFVYGEPSRALDVGFLHVETVMERKSLHFGRVAPHKHPLMGQVTYWFKGGGRYRIEDRTWNFSAPAISFVPSNVVHGFDVGDEADAIVVSISDDLLRVMAGQVDLALDAPMLLSGEAGTPGWTRIGTLLGMVMEEYLGGAAASERVLAGLVGVVLSLMARLGGNVGFEAASPAVALGLELRRAIDRHYREDWPVGRYVERLATTPXXXXXAARTVFGQTVKDMVLERRLLEARRLLRFTIRPVEDIGREIGFEDPAYFSRFFRRRTGLSPTQWRRQNSEAAGTG*