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SCNpilot_expt_1000_bf_scaffold_3591_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3591_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..469)
DNA (468bp) protein (156aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EYR78648.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EIG6_9RHOB
branched-chain amino acid ABC transporter periplasmic binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3591_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

700..1407
DNA (708bp) protein (236aa)
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR78647.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHV7_9RHIZ rbh
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3591_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1506..4169)
DNA (2664bp) protein (888aa)
Maltooligosyl trehalose synthase TreY {ECO:0000313|EMBL:EYR78693.1}; EC=5.4.99.15 {ECO:0000313|EMBL:EYR78693.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
malto-oligosyltrehalose synthase; K06044 (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] rbh
Malto-oligosyltrehalose synthase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A444_RHILW rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4195..4566)
DNA (372bp) protein (124aa)
Inosine-5'-monophosphate dehydrogenase-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQJ2_9RHIZ
Inosine-5'-monophosphate dehydrogenase-like protein {ECO:0000313|EMBL:EYR84664.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Inosine-5'-monophosphate dehydrogenase related protein
SCNpilot_expt_1000_bf_scaffold_3591_curated_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4625..4891)
DNA (267bp) protein (89aa)
malto-oligosyltrehalose trehalohydrolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036BDAC1
malto-oligosyltrehalose trehalohydrolase (EC:3.2.1.141)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU
SCNpilot_expt_1000_bf_scaffold_3591_curated_6
Pantoea sp. PSNIH1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5840..6385)
DNA (546bp) protein (182aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=1484158 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH1.;"
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Pantoea dispersa EGD-AAK13 RepID=U1TVV1_9ENTR
treZ; malto-oligosyltrehalose trehalohydrolase TreZ
SCNpilot_expt_1000_bf_scaffold_3591_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6567..8651
DNA (2085bp) protein (695aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycogen debranching protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037FA6A3 rbh
glycogen debranching enzyme GlgX; K02438 glycogen operon protein GlgX [EC:3.2.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8660..9715
DNA (1056bp) protein (352aa)
Putative DNA topoisomerase I protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWV5_9RHIZ rbh
Putative DNA topoisomerase I protein {ECO:0000313|EMBL:EYR77988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative DNA topoisomerase I protein; K03168 DNA topoisomerase I [EC:5.99.1.2] rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9721..9984)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZN6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84665.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3591_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9981..10370)
DNA (390bp) protein (130aa)
Inosine-5'-monophosphate dehydrogenase-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV40_9RHIZ
Inosine-5'-monophosphate dehydrogenase-like protein {ECO:0000313|EMBL:EYR84666.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
signal-transduction protein
SCNpilot_expt_1000_bf_scaffold_3591_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10387..10602)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESK4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84667.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3591_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10729..11511
DNA (783bp) protein (261aa)
3-ketoacyl-ACP reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI000373883E rbh
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100) rbh
Putative short-chain dehydrogenase/reductase {ECO:0000313|EMBL:CAK09724.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_3591_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11579..13090
DNA (1512bp) protein (504aa)
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYK1_9RHIZ rbh
Long-chain-fatty-acid--CoA ligase LcfB {ECO:0000313|EMBL:EYR83959.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR83959.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
o-succinylbenzoate--CoA ligase (EC:6.2.1.26) rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13087..13704)
DNA (618bp) protein (206aa)
Transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRY9_9RHIZ rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR78694.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3591_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13993..15180
DNA (1188bp) protein (396aa)
Cyanate transport protein CynX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC28_9RHIZ rbh
Cyanate transport protein CynX {ECO:0000313|EMBL:EYR78695.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane transport protein; K03449 MFS transporter, CP family, cyanate transporter rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15232..16068)
DNA (837bp) protein (279aa)
Putative allantoin catabolism protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETT6_9RHIZ rbh
Putative allantoin catabolism protein {ECO:0000313|EMBL:EYR78696.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative allantoin catabolism protein rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16114..16782)
DNA (669bp) protein (223aa)
Ankyrin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWF7_9RHIZ rbh
Ankyrin {ECO:0000313|EMBL:EYR78697.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ankyrin repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_3591_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16970..17416)
DNA (447bp) protein (149aa)
Pseudoazurin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRZ5_9RHIZ
Pseudoazurin {ECO:0000313|EMBL:EYR78699.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pseudoazurin
SCNpilot_expt_1000_bf_scaffold_3591_curated_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17546..17716)
DNA (171bp) protein (57aa)
fumarylpyruvate hydrolase
Fumarylpyruvate hydrolase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JGA2_AGRRK
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:KEA06530.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_3591_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18310..18555
DNA (246bp) protein (82aa)
Homoprotocatechuate degradative operon repressor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETU0_9RHIZ
Homoprotocatechuate degradative operon repressor {ECO:0000313|EMBL:EYR78701.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3591_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18567..19079)
DNA (513bp) protein (171aa)
FMN reductase (NADH) RutF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D125_9RHIZ rbh
FMN reductase (NADH) RutF {ECO:0000313|EMBL:EYR78708.1}; EC=1.5.1.42 {ECO:0000313|EMBL:EYR78708.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hpaC; flavin reductase-like, FMN-binding; K09024 flavin reductase [EC:1.5.1.-]
SCNpilot_expt_1000_bf_scaffold_3591_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19090..19812)
DNA (723bp) protein (241aa)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component HpaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS05_9RHIZ
4-hydroxyphenylacetate 3-monooxygenase oxygenase component HpaB {ECO:0000313|EMBL:EYR78709.1}; EC=1.14.14.9 {ECO:0000313|EMBL:EYR78709.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
4-hydroxyphenylacetate 3-hydroxylase; K00483 4-hydroxyphenylacetate-3-monooxygenase large chain [EC:1.14.14.9] rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19802..20602)
DNA (801bp) protein (267aa)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component HpaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS05_9RHIZ rbh
4-hydroxyphenylacetate 3-monooxygenase oxygenase component HpaB {ECO:0000313|EMBL:EYR78709.1}; EC=1.14.14.9 {ECO:0000313|EMBL:EYR78709.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
4-hydroxyphenylacetate 3-monooxygenase oxygenase component rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20696..21577
DNA (882bp) protein (294aa)
HTH-type transcriptional activator rhaR L-rhamnose operon transcriptional activator rhaR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC42_9RHIZ rbh
Transcriptional regulator AraC family {ECO:0000313|EMBL:EYR78710.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pobr1; L-rhamnose operon transcriptional activator RhaR rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_25
unknown

Not on your lists

21955..22086
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3591_curated_26
unknown

Not on your lists

22227..22370
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3591_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22515..23048
DNA (534bp) protein (178aa)
Putative methyltransferase, YaeB/AF_0241 family {ECO:0000313|EMBL:EYR78711.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7Q4_AGRRK
SCNpilot_expt_1000_bf_scaffold_3591_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23045..23257)
DNA (213bp) protein (71aa)
Molybdenum-pterin binding protein {ECO:0000313|EMBL:EYR78712.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000377563A
molybdo-pterin binding protein
SCNpilot_expt_1000_bf_scaffold_3591_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23346..23951)
DNA (606bp) protein (202aa)
Thiamine-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1P5_9RHIZ rbh
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] rbh
SCNpilot_expt_1000_bf_scaffold_3591_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23948..24721)
DNA (774bp) protein (258aa)
Thiazole synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D693_9RHIZ rbh
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thiG; thiazole synthase; K03149 thiamine biosynthesis ThiG rbh
Displaying items 1-30 of 31 in total

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