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SCNpilot_expt_1000_bf_scaffold_6466_curated_13

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(12530..13150)

Top 3 Functional Annotations

Value Algorithm Source
Putative threonine efflux protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFF7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 85.2
  • Coverage: 209.0
  • Bit_score: 345
  • Evalue 4.30e-92
  • rbh
Putative threonine efflux protein {ECO:0000313|EMBL:EYR77733.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.2
  • Coverage: 209.0
  • Bit_score: 345
  • Evalue 6.10e-92
putative transmembrane efflux protein similarity KEGG
DB: KEGG
  • Identity: 73.0
  • Coverage: 211.0
  • Bit_score: 297
  • Evalue 4.30e-78

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 621
ATGTCCTTCGACCACTGGCTGGCCTTTGCCGCCGCATCCGCCGTCATGCTCGCCATTCCGGGGCCGACGATCCTCCTCGTGATCTCCTATGCGCTCGGCCACGGCCGGCGGACCGCAGGCGCGACGGTCGCGGGCGTCGCACTCGGCGACTTCACCGCCATGACCGCCTCCATGCTCGGCCTCGGCGCCCTGCTCGCCGCGTCGGCGGCGATCTTCACCGTCCTGAAATGGGCGGGCGCGGCCTATCTCGTCTGGCTCGGCATCAAGCTCTGGCGCGCGCCCGTCGCGGCAAGCGCGGAGGGCGAGGCCCCGGCGGAGGGGAGGCCCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAGCATCGTCTTCTTCGTCGCCTTCCTGCCGCAGTTCCTTGACCTCACGCAGCCGGTCCTGCCGCAGATGGTGATCTTCGAGGCGACCTTCCTCGTCCTCGCGACGCTGAACGCCTTTTCCTATGCGCTGCTCGCCTCCGCCGCCCGCAAGACGATCCGCAAACCCTCGGTCCAGAAGGTCGTCAACCGCACCGGCGGAACGCTTCTGATAGGCGCCGGACTGCTCACGGCGGGCCTGCGCAGGGCGGCAGCCTGA
PROTEIN sequence
Length: 207
MSFDHWLAFAAASAVMLAIPGPTILLVISYALGHGRRTAGATVAGVALGDFTAMTASMLGLGALLAASAAIFTVLKWAGAAYLVWLGIKLWRAPVAASAEGEAPAEGRPAXXXXXXXXXXXKSIVFFVAFLPQFLDLTQPVLPQMVIFEATFLVLATLNAFSYALLASAARKTIRKPSVQKVVNRTGGTLLIGAGLLTAGLRRAAA*