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SCNpilot_expt_1000_bf_scaffold_6466_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6466_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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504..1511
DNA (1008bp) protein (336aa)
Bacterial regulatory protein, ArsR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDI5_9RHIZ rbh
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EYR77722.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, ArsR family; K03892 ArsR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_6466_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1513..2418
DNA (906bp) protein (302aa)
5,10-methylenetetrahydrofolate reductase MetF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BY07_9RHIZ rbh
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
metF; 5,10-methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] rbh
SCNpilot_expt_1000_bf_scaffold_6466_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2897..3712)
DNA (816bp) protein (272aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFZ9_9RHIZ rbh
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:EYR77724.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_6466_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3964..5160)
DNA (1197bp) protein (399aa)
Membrane-bound lytic murein transglycosylase B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D252_9RHIZ rbh
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:EYR77725.1}; EC=3.2.1.- {ECO:0000313|EMBL:EYR77725.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lytic murein transglycosylase rbh
SCNpilot_expt_1000_bf_scaffold_6466_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5278..6057)
DNA (780bp) protein (260aa)
Lyzozyme M1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT45_9RHIZ
Lyzozyme M1 {ECO:0000313|EMBL:EYR77726.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glycosyl hydrolase/lysozyme; K07273 lysozyme rbh
SCNpilot_expt_1000_bf_scaffold_6466_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6215..6877)
DNA (663bp) protein (221aa)
25 kDa outer-membrane immunogenic protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD78_9RHIZ rbh
25 kDa outer-membrane immunogenic protein {ECO:0000313|EMBL:EYR77727.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Opacity protein
SCNpilot_expt_1000_bf_scaffold_6466_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7104..8666
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUT1_9RHIZ rbh
Diguanylate cyclase {ECO:0000313|EMBL:EYR77728.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6466_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8733..8942
DNA (210bp) protein (70aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXJ3_9RHIZ
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EYR77729.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6466_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8900..10132
DNA (1233bp) protein (411aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXJ3_9RHIZ rbh
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EYR77729.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
6-aminohexanoate-dimer hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_6466_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10117..10518)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D257_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77730.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6466_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10602..11189
DNA (588bp) protein (196aa)
Acetytransferase (GNAT) family {ECO:0000313|EMBL:EYR77731.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyltransferase (GNAT) family protein
Acetyltransferase (GNAT) family protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GV75_9GAMM
SCNpilot_expt_1000_bf_scaffold_6466_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11366..12307)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXJ2_9RHIZ rbh
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:EYR77732.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lytic transglycosylase
SCNpilot_expt_1000_bf_scaffold_6466_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12530..13150)
DNA (621bp) protein (207aa)
Putative threonine efflux protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFF7_9RHIZ rbh
Putative threonine efflux protein {ECO:0000313|EMBL:EYR77733.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane efflux protein
SCNpilot_expt_1000_bf_scaffold_6466_curated_14
unknown

Not on your lists

comp(13223..13291)
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 14 items

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