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ACD36_35

Alias: ACD36_261564.3066.5

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Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD36_35_1
R_OP11_Gottesmanbacteria_43_11b, Gottesmanbacteria, Microgenomates, Bacteria

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comp(2..127)
DNA (126bp) protein (42aa)
GIY-YIG (db=HMMPfam db_id=PF01541 from=2 to=35 evalue=5.8e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
excinuclease ABC c subunit domain protein; K07461 putative endonuclease Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_43_11b_curated
ACD36_35_2
R_OP11_Gottesmanbacteria_43_11b, Gottesmanbacteria, Microgenomates, Bacteria

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298..1026
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=151 to=163)
seg (db=Seg db_id=seg from=132 to=148)
seg (db=Seg db_id=seg from=9 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
ACD36_35_3
R_OP11_Gottesmanbacteria_43_11b, Gottesmanbacteria, Microgenomates, Bacteria

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comp(1030..2550)
DNA (1521bp) protein (507aa)
integral membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=358 to=380)
seg (db=Seg db_id=seg from=4 to=16)
seg (db=Seg db_id=seg from=160 to=175)
ACD36_35_4
R_OP11_Gottesmanbacteria_43_11b, Gottesmanbacteria, Microgenomates, Bacteria

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comp(2547..3098)
DNA (552bp) protein (184aa)
sigma-70 family RNA polymerase sigma factor
SIGMA70_2 (db=PatternScan db_id=PS00716 from=143 to=169 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r3 (db=HMMPfam db_id=PF04539 from=30 to=105 evalue=1.1e-28 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=81 to=182 evalue=1.7e-28 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Displaying 4 items

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