ggKbase home page

scnpilot_solids1_trim150_scaffold_467_14

Organism: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9

near complete RP 50 / 55 MC: 3 BSCG 49 / 51 MC: 2 ASCG 10 / 38 MC: 1
Location: comp(17968..18792)

Top 3 Functional Annotations

Value Algorithm Source
Collagen triple helix repeat-containing protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TBC3_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 28.8
  • Coverage: 260.0
  • Bit_score: 75
  • Evalue 8.50e-11
Collagen triple helix repeat-containing protein {ECO:0000313|EMBL:EGD48327.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 28.8
  • Coverage: 260.0
  • Bit_score: 75
  • Evalue 1.20e-10
col25a1; collagen, type XXV, alpha 1 similarity KEGG
DB: KEGG
  • Identity: 32.8
  • Coverage: 238.0
  • Bit_score: 72
  • Evalue 1.70e-10

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

[Clostridium] papyrosolvens → Ruminiclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 825
ATGTTTGGACATCTTCGTGAACCATTCGGGAAGGCTGGCCTGGTTGTCGCGATCGTTGCCTTGCTCGCGGCCTTGGTGGGTGGTGCTTATGCCGCCGGGGGCGGGCTCAGCGGCAAGCAAAAGAAGGAAGTAAGAGGGATCGCCAAGAACGAAGCCAAGAGATACGCTGCCCAAGGACCAGTTGGCCCACAGGGTCCTGCCGGGGCGACCGGCAAGGACGGCCTGAACGGCCTCGACGGCGCTCCGGGCGAAGCCGGCAAGAGCGGGGGCAACGGCAGGTCCGTGGCCCTCAGTGAAACGGCCTCGGGATGCGCCGAAGGTGGCATCACCGTTGAAGTTGAAGGCAGTGGCGAACCGCTCGAAATTTGTAACGGCGCAGCAGGGCAGGCCGGGAAAGACGGGGAACCCTGGACCGCTGGCGGAACTCTTCCGAAAAGTTCCACCGAGACCGGCAGCTGGTCGGTGGGGACCTACTTCGGCCCGGCGATGAGCCCGGTGGAAGCCATCGGAAAACCGCTGCTTGCCCCGATCTCGTTCGCCATCCCACTCGCCCAGGGTCTCGATGAAAGCCATGTCCACTTCATCGGAACCGGAGAAACCGCCCCTGTCGGTTGCACTGGTGGGACGGCCGAACATCCCAAGGCCGACTCCGGAAATCTCTGCGTATACGCCGGTGGAAATGAAGGTGTCTCCGTAGAGAAGAGCATCTATACCGCCAGTGGTTCCAACGGGACCCCAGGTGCCTCTACCGCCGGTGCGGTCCTGGCCATGTTGGTCCTCGAAGAAGGGGCGGGCGCCTGGGGCACCTGGGCGGTGACCGGCTAG
PROTEIN sequence
Length: 275
MFGHLREPFGKAGLVVAIVALLAALVGGAYAAGGGLSGKQKKEVRGIAKNEAKRYAAQGPVGPQGPAGATGKDGLNGLDGAPGEAGKSGGNGRSVALSETASGCAEGGITVEVEGSGEPLEICNGAAGQAGKDGEPWTAGGTLPKSSTETGSWSVGTYFGPAMSPVEAIGKPLLAPISFAIPLAQGLDESHVHFIGTGETAPVGCTGGTAEHPKADSGNLCVYAGGNEGVSVEKSIYTASGSNGTPGASTAGAVLAMLVLEEGAGAWGTWAVTG*