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scnpilot_solids2_trim150_scaffold_3051

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_3051_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..625)
-----------------
DNA (624bp)
protein (208aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2-octaprenylphenol hydroxylase (EC:1.14.13.-)
Putative ubiquinone biosynthesis protein UbiB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W782_9GAMM
scnpilot_solids2_trim150_scaffold_3051_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(622..1224)
-----------------
DNA (603bp)
protein (201aa)
Sterol-binding domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W781_9GAMM
Sterol-binding domain-containing protein {ECO:0000313|EMBL:EIL95322.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_3051_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1300..1776)
-----------------
DNA (477bp)
protein (159aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF34_9GAMM
putative rRNA methylase SpoU family
scnpilot_solids2_trim150_scaffold_3051_4
unknown

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comp(1818..2030)
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_3051_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2214..3539)
-----------------
DNA (1326bp)
protein (442aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
16S rRNA m(5)C-967 methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLP3_9GAMM
scnpilot_solids2_trim150_scaffold_3051_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3536..4492)
-----------------
DNA (957bp)
protein (319aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Methionyl-tRNA formyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN1_9GAMM
methionyl-tRNA formyltransferase
scnpilot_solids2_trim150_scaffold_3051_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4489..4998)
-----------------
DNA (510bp)
protein (170aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptide deformylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK57_9GAMM
scnpilot_solids2_trim150_scaffold_3051_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5191..6330
-----------------
DNA (1140bp)
protein (380aa)
LysM domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NKZ6_9GAMM
LysM domain-containing protein
LysM domain-containing protein {ECO:0000313|EMBL:AGG90752.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3051_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6417..7640
-----------------
DNA (1224bp)
protein (408aa)
DNA protecting protein DprA n=1 Tax=Rhodanobacter denitrificans RepID=M4NTD5_9GAMM
DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:AGG90751.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_3051_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7773..8981
-----------------
DNA (1209bp)
protein (403aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA topoisomerase 1 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLP8_9GAMM
DNA topoisomerase I, bacterial
Displaying 10 items

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