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scnpilot_solids2_trim150_scaffold_174

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_174_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..1972
-----------------
DNA (1971bp)
protein (657aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000365EA3E
Uncharacterized protein {ECO:0000313|EMBL:GAO44936.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
TonB-dependent receptor
scnpilot_solids2_trim150_scaffold_174_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1990..2559
-----------------
DNA (570bp)
protein (190aa)
RNA polymerase sigma factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8S8_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_174_3
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2665..2994
-----------------
DNA (330bp)
protein (110aa)
Uncharacterized protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EX36_EMTOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK04239.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
scnpilot_solids2_trim150_scaffold_174_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3001..3498
-----------------
DNA (498bp)
protein (166aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQK9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17748.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_174_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3552..3947
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCI5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02525.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_174_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4019..4768)
-----------------
DNA (750bp)
protein (250aa)
oxidoreductase n=1 Tax=Niabella aurantiaca RepID=UPI000369D7C5 rbh
Oxidoreductase {ECO:0000313|EMBL:KIC96151.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ferredoxin--NAD(+) reductase rbh
scnpilot_solids2_trim150_scaffold_174_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

4903..8325
-----------------
DNA (3423bp)
protein (1141aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
transcription-repair coupling factor n=1 Tax=Segetibacter koreensis RepID=UPI00037008A6
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_174_8
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8463..8696)
-----------------
DNA (234bp)
protein (78aa)
hypothetical protein ACCM5_15378 id=3378424 bin=GWF2_Bacteroidetes_35_48 species=Acaryochloris sp. CCMEE 5410 genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
protein of unknown function DUF433
Tax=GWF2_Bacteroidetes_35_48_curated
scnpilot_solids2_trim150_scaffold_174_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8813..9457)
-----------------
DNA (645bp)
protein (215aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003763C39 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO42227.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
thioredoxin; K07396 putative protein-disulfide isomerase
scnpilot_solids2_trim150_scaffold_174_10
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9601..9891)
-----------------
DNA (291bp)
protein (97aa)
DNA polymerase, beta domain protein region n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GX09_9SPHI
DNA polymerase, beta domain protein region {ECO:0000313|EMBL:EOR96357.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
DNA polymerase beta domain-containing protein; K07075
scnpilot_solids2_trim150_scaffold_174_11
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9942..12812)
-----------------
DNA (2871bp)
protein (957aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCH4_NIAKG
DNA polymerase I {ECO:0000313|EMBL:KIC91017.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_solids2_trim150_scaffold_174_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12970..13521
-----------------
DNA (552bp)
protein (184aa)
DNA-3-methyladenine glycosylase I; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:AEV97481.1}; EC=3.2.2.20 {ECO:0000313|EMBL:AEV97481.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA-3-methyladenine glycosylase I n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THQ3_NIAKG
scnpilot_solids2_trim150_scaffold_174_13
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13583..13921)
-----------------
DNA (339bp)
protein (113aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
MazF family transcriptional regulator; K07171 mRNA interferase [EC:3.1.-.-]
hypothetical protein n=1 Tax=Legionella shakespearei RepID=UPI00037A405E
scnpilot_solids2_trim150_scaffold_174_14
unknown

Not on your lists

comp(13909..14187)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_174_15
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14332..15555
-----------------
DNA (1224bp)
protein (408aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035CA2EE rbh
glucose/sorbosone dehydrogenase
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:AFD09095.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_174_16
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15582..16013)
-----------------
DNA (432bp)
protein (144aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GMT2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR93016.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_174_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16107..16526
-----------------
DNA (420bp)
protein (140aa)
Uncharacterized protein family UPF0079, ATPase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQM3_9SPHI
ATP/GTP hydrolase {ECO:0000313|EMBL:AHF15928.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K06925 UPF0079 ATP-binding protein
scnpilot_solids2_trim150_scaffold_174_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16563..17777
-----------------
DNA (1215bp)
protein (405aa)
Alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase {ECO:0000313|EMBL:AEW03176.1}; EC=1.4.1.1 {ECO:0000313|EMBL:AEW03176.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Alanine dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP58_NIAKG
scnpilot_solids2_trim150_scaffold_174_19
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18056..18250
-----------------
DNA (195bp)
protein (65aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI0003612895
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_solids2_trim150_scaffold_174_20
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18254..18910)
-----------------
DNA (657bp)
protein (219aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH80_9SPHI rbh
Membrane protein {ECO:0000313|EMBL:ETZ21616.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
peptidase membrane zinc metallopeptidase; K06973
scnpilot_solids2_trim150_scaffold_174_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19001..20131)
-----------------
DNA (1131bp)
protein (377aa)
Arginase/agmatinase/formiminoglutamase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIK8_NIAKG
Arginase/agmatinase/formiminoglutamase
Arginase/agmatinase/formiminoglutamase {ECO:0000313|EMBL:AEW02861.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_174_22
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20361..23141
-----------------
DNA (2781bp)
protein (927aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003688C8F
Uncharacterized protein {ECO:0000313|EMBL:GAO42847.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
surface antigen (D15); K07277 outer membrane protein
scnpilot_solids2_trim150_scaffold_174_23
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23184..23693
-----------------
DNA (510bp)
protein (170aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THH3_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO42848.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
outer membrane chaperone Skp; K06142 outer membrane protein
scnpilot_solids2_trim150_scaffold_174_24
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23768..24301
-----------------
DNA (534bp)
protein (178aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THH4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC92143.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
outer membrane chaperone Skp; K06142 outer membrane protein
scnpilot_solids2_trim150_scaffold_174_25
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24364..25188
-----------------
DNA (825bp)
protein (275aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Glutamate racemase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNG0_SOLCM rbh
glutamate racemase rbh
scnpilot_solids2_trim150_scaffold_174_26
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25217..29701)
-----------------
DNA (4485bp)
protein (1495aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0M8_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ81092.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_solids2_trim150_scaffold_174_27
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29854..33516
-----------------
DNA (3663bp)
protein (1221aa)
hypothetical protein n=1 Tax=Methylophilus RepID=UPI00036E48EF
Uncharacterized protein {ECO:0000313|EMBL:GAL83595.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
LGFP repeat-containing protein
scnpilot_solids2_trim150_scaffold_174_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33591..35894)
-----------------
DNA (2304bp)
protein (768aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
ATP-dependent DNA helicase n=1 Tax=Segetibacter koreensis RepID=UPI0003613B6A
scnpilot_solids2_trim150_scaffold_174_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35992..36381)
-----------------
DNA (390bp)
protein (130aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMR5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03086.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_174_30
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36485..38008
-----------------
DNA (1524bp)
protein (508aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1]
phosphoglyceromutase n=1 Tax=Segetibacter koreensis RepID=UPI0003788A8D rbh
Displaying items 1-30 of 79 in total

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