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scnpilot_solids2_trim150_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_238_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..436
DNA (435bp) protein (145aa)
Putative acetyltransferase, GNAT superfamily protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU67_9GAMM
Putative acetyltransferase, GNAT superfamily protein {ECO:0000313|EMBL:EIM03009.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative acetyltransferase, GNAT superfamily
scnpilot_solids2_trim150_scaffold_238_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

433..1212
DNA (780bp) protein (260aa)
septation inhibitor protein n=1 Tax=Dyella ginsengisoli RepID=UPI000345E519
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
septum site-determining protein MinC
scnpilot_solids2_trim150_scaffold_238_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1256..2071
DNA (816bp) protein (272aa)
Site-determining protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3W1_9GAMM
septum site-determining protein MinD
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_238_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2077..2391
DNA (315bp) protein (105aa)
Cell division topological specificity factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WYU4_9GAMM
cell division topological specificity factor MinE
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_238_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2414..2941
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3W3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_238_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2969..3565)
DNA (597bp) protein (199aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU61_9GAMM
DNA-3-methyladenine glycosylase
scnpilot_solids2_trim150_scaffold_238_7
unknown

Not on your lists

comp(3565..3690)
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_238_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3735..4655)
DNA (921bp) protein (307aa)
Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT9_9GAMM
PEP phosphonomutase-like enzyme
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_238_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4748..5893
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89823.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_238_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6017..8854
DNA (2838bp) protein (946aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJK2_9GAMM
scnpilot_solids2_trim150_scaffold_238_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8928..9416)
DNA (489bp) protein (163aa)
endoribonuclease L-PSP n=1 Tax=Variovorax paradoxus RepID=UPI000372F7CC
Variovorax paradoxus strain MEDvA23 contig_48, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28405.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
endoribonuclease L-psp
scnpilot_solids2_trim150_scaffold_238_12
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9550..11205)
DNA (1656bp) protein (552aa)
acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QGH5_AZOSU rbh
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:AEV25054.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
scnpilot_solids2_trim150_scaffold_238_13

Not on your lists

comp(11270..12106)
DNA (837bp) protein (279aa)
Dienelactone hydrolase n=1 Tax=mine drainage metagenome RepID=T1CIK0_9ZZZZ rbh
Dienelactone hydrolase {ECO:0000313|EMBL:EQD67345.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_238_14

Not on your lists

12233..14527
DNA (2295bp) protein (765aa)
TonB-dependent receptor domain protein (Fragment) n=3 Tax=mine drainage metagenome RepID=T0ZD68_9ZZZZ rbh
TonB-dependent receptor domain protein {ECO:0000313|EMBL:EQD42978.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TonB-dependent receptor rbh
scnpilot_solids2_trim150_scaffold_238_15
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14599..15996
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0003162D2C
Uncharacterized protein {ECO:0000313|EMBL:EQB86751.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
sugar (glycoside-Pentoside-Hexuronide) transporter
scnpilot_solids2_trim150_scaffold_238_16

Not on your lists

16096..16875
DNA (780bp) protein (260aa)
Protein containing Transcription regulator LuxR n=2 Tax=mine drainage metagenome RepID=T1AF37_9ZZZZ
Protein containing Transcription regulator LuxR {ECO:0000313|EMBL:EQD39619.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
LuxR family transcriptional regulator; K07782 LuxR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_238_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17014..17466)
DNA (453bp) protein (151aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZL7_9GAMM
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EIL92658.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ribosomal-protein-alanine acetyltransferase
scnpilot_solids2_trim150_scaffold_238_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17511..18008)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ62_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87994.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_238_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18005..18781)
DNA (777bp) protein (259aa)
phosphatidylserine synthase (EC:2.7.8.8)
Phosphatidylserine synthase {ECO:0000313|EMBL:AGG87993.1}; EC=2.7.8.8 {ECO:0000313|EMBL:AGG87993.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphatidylserine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEP8_9GAMM
scnpilot_solids2_trim150_scaffold_238_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18889..19332
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90128.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_238_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19558..21255
DNA (1698bp) protein (566aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Proline--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZM1_9GAMM
prolyl-tRNA synthetase, family II
scnpilot_solids2_trim150_scaffold_238_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21498..21821
DNA (324bp) protein (108aa)
DNA-binding protein H-NS n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ66_9GAMM
DNA-binding protein H-NS
DNA-binding protein H-NS {ECO:0000313|EMBL:AGG87990.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_238_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21904..23184)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ12_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87203.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_238_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23306..24691)
DNA (1386bp) protein (462aa)
Histidine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJL3_9GAMM
HAMP domain-containing protein,histidine kinase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_238_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24741..26081)
DNA (1341bp) protein (447aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ06_9GAMM
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EIL87197.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
scnpilot_solids2_trim150_scaffold_238_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26132..27346)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ74_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87828.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC-type antimicrobial peptide transport system, permease component
scnpilot_solids2_trim150_scaffold_238_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27420..28742)
DNA (1323bp) protein (441aa)
ABC transporter permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSF6_9GAMM
ABC transporter permease {ECO:0000313|EMBL:EIL90147.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC transporter permease; K02004 putative ABC transport system permease protein
scnpilot_solids2_trim150_scaffold_238_28
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28777..30006)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037B6369
ABC-type antimicrobial peptide transport system, permease component
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids2_trim150_scaffold_238_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30075..31379)
DNA (1305bp) protein (435aa)
ABC transporter permease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VIZ7_9GAMM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGI78589.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ABC-type antimicrobial peptide transport system, permease component
scnpilot_solids2_trim150_scaffold_238_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31438..31644
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PH97_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying items 1-30 of 69 in total

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