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scnpilot_solids1_trim150_scaffold_1863_7

Organism: SCNPILOT_SOLID_1_TRIM150_Alphaproteobacteria_62_14

partial RP 39 / 55 BSCG 36 / 51 ASCG 6 / 38
Location: comp(3806..6280)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z3G4_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 68.9
  • Coverage: 694.0
  • Bit_score: 904
  • Evalue 9.70e-260
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963, ECO:0000313|EMBL:CDO58722.1}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.7
  • Coverage: 692.0
  • Bit_score: 933
  • Evalue 2.70e-268
sigma D (sigma 70) factor of RNA polymerase similarity KEGG
DB: KEGG
  • Identity: 68.9
  • Coverage: 694.0
  • Bit_score: 904
  • Evalue 3.00e-260

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Taxonomy

Candidatus Phaeomarinobacter ectocarpi → Candidatus Phaeomarinobacter → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2475
GTGAAAGTGGCGACGAAGACTGGCTCCGTGAAGAAGAAGGCGAAGCCTCAGGCGAAACAGGCGCCTGCCAAGGCCGCCAAAAAGCGTGCCGCACCGGCGCGTGCGGCAACGAAGGCCGTGGCGCCCGCCAAGAAGGCGCCGGTTCGCGCCAAAGCCGCCAAACCCGAGAAGACTGCGCCGCCGCGCCCGGCCCGCAAGGCGAAACCGCCGCCGCCGGCCAAAGCCGCGCCCCCGCACGCGAAGCCCGATGCAAAGGCGCGCGCCAAATCCGGCGCGAAGCCAGAGATCAAAAAAACAGAACAGTCCGCCACCCCAGCGGCAAGTGAGAGTAAGCAGCCCATGCCGCTGGAAACAGCCGCCGCGAAGAAATCTGTAAAACCGTTGCCCGCGAAGCTTGCGTTGAAGACCGGCTCGCCCGATCCGGCCATGCCGCAGCAGGATGCGGATTCGCCCCTGCTCGACATGAGCGATGTCGGCGTGCGCAAAATGATTCAGCGCGCCAAACAACGCGGCTATGTCACTTATGACGAGTTGAACAAGGTTCTGCCCTCCGACAAGGTGTCGTCCGAACAGATCGAAGACACGATGTCGATGCTCAGCGAAATGGGCATCAACGTCATCGAGAGTGAAGAGCAGGAAGAACAGAGCGAAGGCGATGTGCCTGCGCTGGCCGAAGGCAAGGAAGTCGCCACCAAGACCGGCACCGCCACCGAACAATATGACCGGACCGACGACCCCGTGCGCATGTATCTGCGCGAAATGGGGTCTGTCGAACTTCTGAGCCGCGAAGGCGAAATTGCCATCGCCAAGCGCATCGAGGCCGGCCGCGAATTGATGATCGGCGCGCTGTGCGAAAGCCCGCTGACGTTCGAGGCGCTGACCGTCTGGCGCGATGAACTGAACGAAGGCAAGGTTCTGCTGCGCGACATCATCGATCTGGAAGCGATGTATGGCGCGGGCCCCGATGGGCAGTCCGCGGCGCCGCAAACCGTGGCACAGCCCGCGATTTCGCAGATGAACGGCCATGCCGCCACCGCACCGGCGGAGGTGAAGCCGGCAGAGATGAGACCGGCGGAGGTGAAGCCGGCAGAGATGAAAAAGCCGGAGGCGCCAAAGCCGGCCGCCAGCGGCGAAGAAACCGATCCGGGCGAGGCCGCAGCGGCAGCCGATTCCGCCGCCGATGGCGATGATTTCGATGATGAGGGCAGCCTGCCCCTGTCGGCGATGGAAGCAGCCCTGAAGCCCCAGGTGCTCGAAACGCTGGACCAGCTTGCCTCGCTCTACAAGAAACTCGGCAAGCTGCAGGATGCCTCCGTCGAAGCACAGCTTGCCTCCGATGAGCTTTCCACCAGCCAGGAACGCCGCTTCAAGAAGCTGCATGCTGATACGGTCGACCTGGTCAAAGGGCTGAAGCTCAATAACAACCGCATCGAAGCCCTGGTCGATCAGATGTACGGCATCAATCGCCGCCTGGTCAGCCTGGAAGGGCGGCTACTGCGACTTGCGGAAGCCCATGGTGTCGACCGCGCCGATTTCCTGAAAGAGCATTTCGGCAACGAGCTCGATCCGAACTGGGCACGGCGCGTCGGCCGGCTGTCGCGGCCGGGCTGGAAAGAATTCGTGCTGGAAGAGCGTGACAAGGTTCACGCCCTGCGCGAGGAGATTCAGACCCTGGCGCAGGAAATGCGGCAGTCGATCTCCGAGTTCCGCCGCGTGGTGCACACGGTGCAGAAGGGCGAGCGCGAATCCGGCCAGGCGAAGAAGGAAATGATCGAGGCGAATCTGCGCCTCGTGATTTCAATCGCCAAGAAATACACCAATCGCGGTCTGCAGTTCCTCGACCTGATTCAGGAAGGCAATATCGGCCTGATGAAGGCGGTGGACAAATTCGAATACCGCCGCGGCTATAAGTTCTCGACCTATGCGACGTGGTGGATCCGGCAGGCGATCACCCGTTCCATCGCCGATCAGGCCCGCACCATCCGCATTCCGGTGCATATGATCGAGACCATCAACAAGCTGGTGCGCACCTCGCGCCAGATGCTGCACGAAATCGGCCGCGAGCCGACGCCGGAAGAACTGGCCGAACGCCTCGCCATGCCGCTTGAGAAAGTACGCAAGGTTCTGAAAATCGCGAAGGAACCGATCAGCCTCGAAACCCCCATCGGCGACGAGGAAGATTCGCATCTGGGCGATTTCATCGAGGACAAGAACGCCGTCCTGCCGATCGATGCCGCCATTCAGGCAAACTTGCGCGAGACCACGACGCGCGTGCTGGCCACGCTCACCCCGCGTGAGGAACGCGTGCTGCGCATGCGCTTCGGCATCGGCATGAACACCGATCACACGCTGGAGGAAGTGGGCCAGCAGTTCTCGGTCACGCGCGAACGTATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGAAGCACCCCAGCCGCAGCCGCAAACTGCGCAGCTTCCTCGACAGTTGA
PROTEIN sequence
Length: 825
VKVATKTGSVKKKAKPQAKQAPAKAAKKRAAPARAATKAVAPAKKAPVRAKAAKPEKTAPPRPARKAKPPPPAKAAPPHAKPDAKARAKSGAKPEIKKTEQSATPAASESKQPMPLETAAAKKSVKPLPAKLALKTGSPDPAMPQQDADSPLLDMSDVGVRKMIQRAKQRGYVTYDELNKVLPSDKVSSEQIEDTMSMLSEMGINVIESEEQEEQSEGDVPALAEGKEVATKTGTATEQYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRELMIGALCESPLTFEALTVWRDELNEGKVLLRDIIDLEAMYGAGPDGQSAAPQTVAQPAISQMNGHAATAPAEVKPAEMRPAEVKPAEMKKPEAPKPAASGEETDPGEAAAAADSAADGDDFDDEGSLPLSAMEAALKPQVLETLDQLASLYKKLGKLQDASVEAQLASDELSTSQERRFKKLHADTVDLVKGLKLNNNRIEALVDQMYGINRRLVSLEGRLLRLAEAHGVDRADFLKEHFGNELDPNWARRVGRLSRPGWKEFVLEERDKVHALREEIQTLAQEMRQSISEFRRVVHTVQKGERESGQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQANLRETTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS*