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SCNPILOT_SOLID_1_TRIM150_Alphaproteobacteria_62_14

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK

Properties

Avg. coverage: 13.61 Longest contig: 42.44 Kbp Bin length: 1.20 Mbp GC content: 61.68 %
Contigs count: 142 Features count: 1255 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 39 / 55 BSCG 36 / 51 ASCG 6 / 38
Displaying items 1-50 of 142 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
scnpilot_solids1_trim150_scaffold_709
Class: Alphaproteobacteria (84.21%)
39 42445 bp 57.96 13.82 89.06
scnpilot_solids1_trim150_scaffold_653
Class: Alphaproteobacteria (54.17%)
25 25337 bp 60.71 13.44 93.15
scnpilot_solids1_trim150_scaffold_2021
Class: Alphaproteobacteria (75%)
21 18389 bp 61.59 14.46 93.51
scnpilot_solids1_trim150_scaffold_1620
Class: Alphaproteobacteria (81.25%)
17 16443 bp 59.53 13.07 91.30
scnpilot_solids1_trim150_scaffold_927
Order: Rhizobiales (58.82%)
17 18854 bp 58.75 14.22 91.21
scnpilot_solids1_trim150_scaffold_3116
Class: Alphaproteobacteria (88.24%)
17 6970 bp 61.23 12.61 98.61
scnpilot_solids1_trim150_scaffold_1775
Class: Alphaproteobacteria (85.71%)
16 11141 bp 61.08 13.29 91.59
scnpilot_solids1_trim150_scaffold_2427
Class: Alphaproteobacteria (64.29%)
16 14385 bp 61.64 13.00 85.62
scnpilot_solids1_trim150_scaffold_1413
Class: Alphaproteobacteria (66.67%)
15 13300 bp 61.23 11.84 90.23
scnpilot_solids1_trim150_scaffold_1163
Class: Alphaproteobacteria (53.33%)
15 15498 bp 61.88 12.58 93.73
scnpilot_solids1_trim150_scaffold_1432
Class: Alphaproteobacteria (66.67%)
15 13162 bp 61.21 12.15 92.24
scnpilot_solids1_trim150_scaffold_2350
Class: Alphaproteobacteria (86.67%)
15 15420 bp 59.18 13.37 85.60
scnpilot_solids1_trim150_scaffold_1933
Class: Alphaproteobacteria (72.73%)
14 10197 bp 59.34 12.89 86.17
scnpilot_solids1_trim150_scaffold_1148
Class: Alphaproteobacteria (61.54%)
13 15656 bp 61.79 15.59 90.83
scnpilot_solids1_trim150_scaffold_1716
Class: Alphaproteobacteria (76.92%)
13 11502 bp 61.47 13.78 93.30
scnpilot_solids1_trim150_scaffold_2465
Class: Alphaproteobacteria (50%)
12 8348 bp 62.37 14.02 90.63
scnpilot_solids1_trim150_scaffold_1616
Class: Alphaproteobacteria (83.33%)
12 12057 bp 62.40 13.45 95.42
scnpilot_solids1_trim150_scaffold_2522
Class: Alphaproteobacteria (80%)
12 8183 bp 60.53 12.37 87.85
scnpilot_solids1_trim150_scaffold_2296
Class: Alphaproteobacteria (50%)
12 8834 bp 60.48 15.43 78.82
scnpilot_solids1_trim150_scaffold_5142
Order: Rhizobiales (50%)
12 8093 bp 61.67 14.03 91.52
scnpilot_solids1_trim150_scaffold_1455
Class: Alphaproteobacteria (58.33%)
12 13003 bp 60.46 13.13 89.47
scnpilot_solids1_trim150_scaffold_2148
Class: Alphaproteobacteria (75%)
12 9379 bp 62.32 11.99 92.50
scnpilot_solids1_trim150_scaffold_2936
Class: Alphaproteobacteria (50%)
12 12122 bp 61.72 17.35 91.35
scnpilot_solids1_trim150_scaffold_2995
Class: Alphaproteobacteria (72.73%)
11 7225 bp 62.82 14.35 87.03
scnpilot_solids1_trim150_scaffold_1863
Order: Rhizobiales (54.55%)
11 10614 bp 62.84 14.85 91.46
scnpilot_solids1_trim150_scaffold_2829
Class: Alphaproteobacteria (63.64%)
11 7548 bp 61.75 14.27 83.55
scnpilot_solids1_trim150_scaffold_1703
Class: Alphaproteobacteria (90.91%)
11 11573 bp 61.99 14.92 95.26
scnpilot_solids1_trim150_scaffold_2851
Class: Alphaproteobacteria (90.91%)
11 10809 bp 62.20 14.47 97.36
scnpilot_solids1_trim150_scaffold_2097
Class: Alphaproteobacteria (81.82%)
11 9583 bp 62.66 12.69 90.85
scnpilot_solids1_trim150_scaffold_2671
Class: Alphaproteobacteria (81.82%)
11 9481 bp 64.69 12.47 85.15
scnpilot_solids1_trim150_scaffold_2688
Class: Alphaproteobacteria (81.82%)
11 12337 bp 62.26 14.66 88.88
scnpilot_solids1_trim150_scaffold_4309
Class: Alphaproteobacteria (80%)
10 8693 bp 62.25 12.92 94.32
scnpilot_solids1_trim150_scaffold_2524
Class: Alphaproteobacteria (80%)
10 9529 bp 62.48 13.19 86.48
scnpilot_solids1_trim150_scaffold_2034
Class: Alphaproteobacteria (80%)
10 11504 bp 62.26 12.45 96.72
scnpilot_solids1_trim150_scaffold_3826
Order: Rhizobiales (50%)
10 7958 bp 60.61 11.89 89.38
scnpilot_solids1_trim150_scaffold_5398
Class: Alphaproteobacteria (80%)
10 7872 bp 61.45 13.49 93.25
scnpilot_solids1_trim150_scaffold_3115
Class: Alphaproteobacteria (50%)
10 8538 bp 62.02 12.19 84.29
scnpilot_solids1_trim150_scaffold_3119
Order: Rhizobiales (55.56%)
10 6964 bp 62.69 13.89 82.84
scnpilot_solids1_trim150_scaffold_4719
Domain: Bacteria (77.78%)
10 7616 bp 62.39 11.34 98.58
scnpilot_solids1_trim150_scaffold_2896
Class: Alphaproteobacteria (55.56%)
10 7416 bp 63.13 13.49 91.86
scnpilot_solids1_trim150_scaffold_3180
Class: Alphaproteobacteria (70%)
10 6851 bp 60.95 13.40 89.99
scnpilot_solids1_trim150_scaffold_2190
Class: Alphaproteobacteria (88.89%)
9 9196 bp 61.89 12.77 92.52
scnpilot_solids1_trim150_scaffold_1828
Class: Alphaproteobacteria (88.89%)
9 10843 bp 59.12 14.07 97.53
scnpilot_solids1_trim150_scaffold_3224
Order: Rhizobiales (66.67%)
9 7980 bp 64.07 15.58 88.16
scnpilot_solids1_trim150_scaffold_2713
Class: Alphaproteobacteria (55.56%)
9 7770 bp 62.65 13.88 85.64
scnpilot_solids1_trim150_scaffold_2459
Class: Alphaproteobacteria (77.78%)
9 8364 bp 59.16 12.86 90.60
scnpilot_solids1_trim150_scaffold_2208
Class: Alphaproteobacteria (77.78%)
9 9127 bp 61.96 12.92 93.65
scnpilot_solids1_trim150_scaffold_2998
Class: Alphaproteobacteria (88.89%)
9 7215 bp 63.20 13.43 87.11
scnpilot_solids1_trim150_scaffold_1891
Class: Alphaproteobacteria (55.56%)
9 10451 bp 61.37 14.50 91.46
scnpilot_solids1_trim150_scaffold_2305
Class: Alphaproteobacteria (55.56%)
9 8802 bp 61.61 13.75 90.63
Displaying items 1-50 of 142 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.