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scnpilot_solids1_trim150_scaffold_1703

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1703_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..204
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PR74_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42035.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
two-component response regulator; K02483 two-component system, OmpR family, response regulator
scnpilot_solids1_trim150_scaffold_1703_2
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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227..1579
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL9_PARL1 rbh
integral membrane sensor signal transduction histidine kinase rbh
scnpilot_solids1_trim150_scaffold_1703_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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1639..3027
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRM3_PARL1
Uncharacterized protein {ECO:0000313|EMBL:CDO60689.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1703_4

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comp(3046..4242)
DNA (1197bp) protein (399aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRM5_PARL1 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKO11504.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
scnpilot_solids1_trim150_scaffold_1703_5
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4450..4794
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NWQ7_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KJB96025.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1703_6
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4855..5361
DNA (507bp) protein (169aa)
cytochrome C n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B7535C
ccmE; CcmE/CycJ protein
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
scnpilot_solids1_trim150_scaffold_1703_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5358..7325
DNA (1968bp) protein (656aa)
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN1_PARL1
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:ABS62564.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_1703_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7322..7771
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003642416
ccmH; cytochrome C-type biogenesis protein CcmH; K02200 cytochrome c-type biogenesis protein CcmH
Protein involved in biosynthesis of c-type cytochromes {ECO:0000313|EMBL:EJL29663.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids1_trim150_scaffold_1703_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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7922..9487
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI00035DE0B9 rbh
Protease Do {ECO:0000313|EMBL:GAK44837.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
dop; serine protease DO-like protease
scnpilot_solids1_trim150_scaffold_1703_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9540..10217
DNA (678bp) protein (226aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN4_PARL1 rbh
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS62567.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids1_trim150_scaffold_1703_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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10204..11571
DNA (1368bp) protein (456aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN5_PARL1 rbh
integral membrane sensor signal transduction histidine kinase rbh
Displaying 11 items

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