ggKbase home page

scnpilot_solids1_trim150_scaffold_2427

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2427_1
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41..952)
DNA (912bp) protein (304aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
dadX-1; alanine racemase 1 (EC:5.1.1.1)
Alanine racemase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VJB8_9RHIZ
scnpilot_solids1_trim150_scaffold_2427_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1088..1543
DNA (456bp) protein (152aa)
transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI0003655E51
AsnC family transcriptional regulator
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:CCF01020.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
scnpilot_solids1_trim150_scaffold_2427_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1686..3107
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030347F2
voltage-gated chloride channel
Putative chloride channel family protein {ECO:0000313|EMBL:AEI06361.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_2427_4
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3200..3952
DNA (753bp) protein (251aa)
Putative integral membrane transmembrane protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NEF8_RALSL
Membrane protein {ECO:0000313|EMBL:KFF30207.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
putative integral membrane transmembrane protein
scnpilot_solids1_trim150_scaffold_2427_5
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3983..4588)
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=2 Tax=Cupriavidus RepID=Q1LPM7_RALME
TetR family transcriptional regulator {ECO:0000313|EMBL:KFA91545.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_2427_6
unknown

Not on your lists

comp(4727..5080)
DNA (354bp) protein (118aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2427_7
unknown

Not on your lists

comp(5093..5476)
DNA (384bp) protein (128aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2427_trna_2
unknown

Not on your lists

comp(5947..6018)
DNA (72bp)
transferRNA Asn
scnpilot_solids1_trim150_scaffold_2427_8
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6101..6355
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AII9_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:GAK71192.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2427_trna_1
unknown

Not on your lists

comp(6671..6741)
DNA (71bp)
transferRNA Cys
scnpilot_solids1_trim150_scaffold_2427_9
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6920..7543
DNA (624bp) protein (208aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11I11_MESSB
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:KFB09862.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
scnpilot_solids1_trim150_scaffold_2427_10
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7585..8952
DNA (1368bp) protein (456aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXH8_PARL1 rbh
Type I secretion outer membrane protein, TolC {ECO:0000313|EMBL:CDO61241.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
TolC family type I secretion outer membrane protein; K12340 outer membrane channel protein rbh
scnpilot_solids1_trim150_scaffold_2427_11
unknown

Not on your lists

9077..9658
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLA9_AFIFE
scnpilot_solids1_trim150_scaffold_2427_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9859..12621
DNA (2763bp) protein (921aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] rbh
Valine--tRNA ligase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PPH3_9RHOB rbh
scnpilot_solids1_trim150_scaffold_2427_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12695..13978
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0J3X5_ACIMA rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN76015.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2427_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13975..14385
DNA (411bp) protein (137aa)
Hypothetical membrane spanning protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BVM2_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN77299.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
Displaying 16 items

View Taxonomy