ggKbase home page

scnpilot_solids1_trim150_scaffold_2936

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2936_1
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1071
DNA (1071bp) protein (357aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase n=1 Tax=Ochrobactrum intermedium M86 RepID=M5K2T9_9RHIZ
scnpilot_solids1_trim150_scaffold_2936_2
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1074..1778
DNA (705bp) protein (235aa)
uroporphyrinogen III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen III synthase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NRL2_AZOS1
Uroporphyrinogen III synthase {ECO:0000313|EMBL:BAI71041.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
scnpilot_solids1_trim150_scaffold_2936_3
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1984..3744)
DNA (1761bp) protein (587aa)
flbA n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A7C72F rbh
Uncharacterized protein {ECO:0000313|EMBL:KIF26118.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_2936_4
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3898..4323
DNA (426bp) protein (142aa)
flagellar biosynthesis repressor FlbT n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A2F8AC
Putative flagellum biosynthesis repressor protein FlbT {ECO:0000313|EMBL:GAK34527.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
flbT; flagellar biosynthesis repressor FlbT; K06601 flagellar protein FlbT
scnpilot_solids1_trim150_scaffold_2936_5
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

4283..4633
DNA (351bp) protein (117aa)
Flagellar FlaF family protein n=2 Tax=Caulobacter RepID=B0SZU2_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:KIF26037.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flaF; flagellar biosynthesis regulatory protein FlaF; K06602 flagellar protein FlaF
scnpilot_solids1_trim150_scaffold_2936_6
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4869..5693
DNA (825bp) protein (275aa)
flagellin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039DBC07
Flagellin {ECO:0000313|EMBL:ESQ90687.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
flagellin domain-containing protein
scnpilot_solids1_trim150_scaffold_2936_7
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

5985..6809
DNA (825bp) protein (275aa)
flagellin n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039DBC07 rbh
Flagellin {ECO:0000313|EMBL:KIF26036.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
flagellin domain-containing protein; K02406 flagellin rbh
scnpilot_solids1_trim150_scaffold_2936_8
unknown

Not on your lists

6945..7274
DNA (330bp) protein (110aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2936_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7292..8527)
DNA (1236bp) protein (412aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J4N3_9PROT rbh
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EKE69857.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
DegT/DnrJ/EryC1/StrS aminotransferase rbh
scnpilot_solids1_trim150_scaffold_2936_10
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8527..9618)
DNA (1092bp) protein (364aa)
Flagellin modification protein FlmA n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UE12_9RHOB rbh
Flagellin modification protein FlmA {ECO:0000313|EMBL:EAP91493.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
polysaccharide biosynthesis protein CapD rbh
scnpilot_solids1_trim150_scaffold_2936_11
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9676..11664)
DNA (1989bp) protein (663aa)
Uncharacterized protein n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39YI3_GEOMG rbh
glycoside hydrolase family protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB30691.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
scnpilot_solids1_trim150_scaffold_2936_12
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11661..12122)
DNA (462bp) protein (154aa)
Phosphoribosylglycinamide synthetase n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RBN4_9DELT
Phosphoribosylglycinamide synthetase
Phosphoribosylglycinamide synthetase {ECO:0000313|EMBL:CCO23595.1}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio hydrothermalis AM13 = DSM 14728.;"
Displaying 12 items

View Taxonomy