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scnpilot_solids1_trim150_scaffold_709

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_709_1
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..827
DNA (825bp) protein (275aa)
glutamine amidotransferase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
Glutamine amidotransferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CI56_9RHIZ
Glutamine amidotransferase {ECO:0000313|EMBL:EIZ83150.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
scnpilot_solids1_trim150_scaffold_709_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(806..2521)
DNA (1716bp) protein (572aa)
cytochrome C biogenesis protein n=1 Tax=Dyella japonica RepID=UPI000319A302
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AIF47424.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
cytochrome c biogenesis protein
scnpilot_solids1_trim150_scaffold_709_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2683..3519
DNA (837bp) protein (279aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
lactate dehydrogenase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000375A7B4
hypothetical protein; K07115
scnpilot_solids1_trim150_scaffold_709_trna_1
unknown

Not on your lists

3675..3761
DNA (87bp)
transferRNA Ser
scnpilot_solids1_trim150_scaffold_709_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4172..5833)
DNA (1662bp) protein (554aa)
Resolvase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8D0_NOVAD rbh
resolvase-like protein rbh
Resolvase-like protein {ECO:0000313|EMBL:ABD25893.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_solids1_trim150_scaffold_709_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5788..6204)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C9_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25894.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_solids1_trim150_scaffold_709_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6204..6488)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C8_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25895.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_solids1_trim150_scaffold_709_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6659..7447
DNA (789bp) protein (263aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
DNA methylase N-4/N-6 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C7_NOVAD
DNA methylase N-4/N-6
scnpilot_solids1_trim150_scaffold_709_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7440..7928
DNA (489bp) protein (163aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
DNA methylase N-4/N-6 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8C7_NOVAD
DNA methylase N-4/N-6
scnpilot_solids1_trim150_scaffold_709_9
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7925..8497
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RFT9_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI71027.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
scnpilot_solids1_trim150_scaffold_709_10
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8494..9060
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU20_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36519.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_709_11
unknown

Not on your lists

9283..9705
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B655A5
scnpilot_solids1_trim150_scaffold_709_12
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10196..10582)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036E18D1
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:EKE71540.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
sdhD; succinate dehydrogenase, hydrophobic membrane anchor subunit
scnpilot_solids1_trim150_scaffold_709_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10587..10985)
DNA (399bp) protein (133aa)
succinate dehydrogenase subunit C (EC:1.3.5.1); K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase, cytochrome b subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE65_9GAMM
Succinate dehydrogenase, cytochrome b subunit {ECO:0000313|EMBL:EIL97756.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_709_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11006..11845)
DNA (840bp) protein (280aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE66_9GAMM
scnpilot_solids1_trim150_scaffold_709_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11899..13122)
DNA (1224bp) protein (408aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SVA9_CAUSK rbh
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:GAK43773.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
acyl-CoA dehydrogenase domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_709_16
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13552..13755)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EI08_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ35802.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
scnpilot_solids1_trim150_scaffold_709_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13752..15047)
DNA (1296bp) protein (432aa)
Blr5774 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89I65_BRADU rbh
sulfide-quinone reductase rbh
Blr5774 protein {ECO:0000313|EMBL:BAC51039.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
scnpilot_solids1_trim150_scaffold_709_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15184..15537
DNA (354bp) protein (118aa)
Putative transcriptional regulatory protein, Ars family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TRB5_9BRAD
Putative transcriptional regulatory protein, Ars family {ECO:0000313|EMBL:CCE09003.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_709_19
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15618..16625
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PJ56_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EJW11022.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_709_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16622..19843
DNA (3222bp) protein (1074aa)
multidrug transporter AcrB n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345BD6F rbh
Multidrug transporter AcrB {ECO:0000313|EMBL:KIZ45208.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
acriflavin resistance protein rbh
scnpilot_solids1_trim150_scaffold_709_21
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19972..22485)
DNA (2514bp) protein (838aa)
Cation-transporting ATPase Pma1 {ECO:0000313|EMBL:ESS71566.1}; EC=3.6.3.- {ECO:0000313|EMBL:ESS71566.1};; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
ATPase, E1-E2 type; K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
Cation-transporting ATPase Pma1 n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5DW42_9GAMM
scnpilot_solids1_trim150_scaffold_709_22
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22743..25070)
DNA (2328bp) protein (776aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
xfp; phosphoketolase (EC:4.1.2.22); K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22]
phosphoketolase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037645D6
scnpilot_solids1_trim150_scaffold_709_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25094..26290)
DNA (1197bp) protein (399aa)
ackA; acetate kinase; K00925 acetate kinase [EC:2.7.2.1] rbh
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Acetate kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ3_9SPHN rbh
scnpilot_solids1_trim150_scaffold_709_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26665..27198)
DNA (534bp) protein (178aa)
Cytochrome B561 n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DP76_METS0
Strain MEJ076 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIP97665.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cytochrome b561; K12262 cytochrome b561
scnpilot_solids1_trim150_scaffold_709_25
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27422..28684)
DNA (1263bp) protein (421aa)
Mn2+/Fe2_transporter, NRAMP family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YML0_9RHIZ rbh
Mn2+/Fe2_transporter, NRAMP family {ECO:0000313|EMBL:EIM25202.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
manganese transport protein rbh
scnpilot_solids1_trim150_scaffold_709_26
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28861..29898)
DNA (1038bp) protein (346aa)
Alcohol dehydrogenase GroES domain-containing protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9P7_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:KGE01616.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
alcohol dehydrogenase GroES domain-containing protein
scnpilot_solids1_trim150_scaffold_709_27
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30097..30960
DNA (864bp) protein (288aa)
Putative universal stress protein UspA-like n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZI84_AZOL4
Universal stress protein UspA {ECO:0000313|EMBL:KJR62701.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative universal stress protein UspA-like
scnpilot_solids1_trim150_scaffold_709_28
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30950..32524)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JW41_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE78787.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein; K07028
scnpilot_solids1_trim150_scaffold_709_29
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32635..33174)
DNA (540bp) protein (180aa)
Twin-arginine translocation pathway signal n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AD47_NITEC
Uncharacterized protein {ECO:0000313|EMBL:GAM98525.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
twin-arginine translocation pathway signal
Displaying items 1-30 of 39 in total

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