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scnpilot_solids1_trim150_scaffold_2995

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2995_1
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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1..483
DNA (483bp) protein (161aa)
MFS transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI0003636CF3
MFS transporter {ECO:0000313|EMBL:AKD58259.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
major facilitator superfamily protein; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
scnpilot_solids1_trim150_scaffold_2995_2

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comp(528..701)
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035CE96D
Marine sediment metagenome DNA, contig: S01H1_S26875 {ECO:0000313|EMBL:GAG34545.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2995_3
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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868..1074
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NDQ1_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC62190.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_solids1_trim150_scaffold_2995_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1100..1831)
DNA (732bp) protein (244aa)
Diguanylate cyclase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUW0_PARL1
GGDEF family protein {ECO:0000313|EMBL:CDO58942.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
diguanylate cyclase
scnpilot_solids1_trim150_scaffold_2995_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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2017..2517
DNA (501bp) protein (167aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
phosphoribosylaminoimidazole carboxylase catalytic subunit; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003767335
scnpilot_solids1_trim150_scaffold_2995_6
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2514..3611
DNA (1098bp) protein (366aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="
phosphoribosylaminoimidazole carboxylase ATPase subunit; K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] rbh
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036BD947 rbh
scnpilot_solids1_trim150_scaffold_2995_7
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3797..4801
DNA (1005bp) protein (335aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PH25_9CAUL rbh
aspartate-semialdehyde dehydrogenase rbh
scnpilot_solids1_trim150_scaffold_2995_8
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4798..5481)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJ96_9PROT
putative ubiquinone biosynthesis protein
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
scnpilot_solids1_trim150_scaffold_2995_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5478..6113)
DNA (636bp) protein (212aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Peptide deformylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUU9_PARL1
scnpilot_solids1_trim150_scaffold_2995_10
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6200..6412
DNA (213bp) protein (71aa)
30S ribosomal protein S21 n=1 Tax=Methylopila sp. M107 RepID=UPI00036D88FA
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
scnpilot_solids1_trim150_scaffold_2995_11
unknown

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6669..7223
DNA (555bp) protein (185aa)

This feature has no annotations

Displaying 11 items

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