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scnpilot_solids2_trim150_scaffold_86

Search features with annotation key words

Displaying items 31-60 of 291 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_86_31
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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16039..16983
-----------------
DNA (945bp)
protein (315aa)
rpoA; DNA-directed RNA polymerase, alpha subunit/40 kD subunit; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit alpha n=1 Tax=Microbacterium barkeri RepID=UPI000313FA41 rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_86_32
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


17019..17696
-----------------
DNA (678bp)
protein (226aa)
50S ribosomal protein L17 n=1 Tax=Glaciibacter superstes RepID=UPI0003B6FB01
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
scnpilot_solids2_trim150_scaffold_86_33
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17802..19379)
-----------------
DNA (1578bp)
protein (526aa)
4-coumarate--CoA ligase (EC:6.2.1.12); K01904 4-coumarate--CoA ligase [EC:6.2.1.12] rbh
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000318F949 rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM73271.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
scnpilot_solids2_trim150_scaffold_86_34
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19432..20724)
-----------------
DNA (1293bp)
protein (431aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D333B5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYT60006.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
Two-component system, sensor histidine kinase,possibly regulating citrate/malate metabolism
scnpilot_solids2_trim150_scaffold_86_35
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20882..21898
-----------------
DNA (1017bp)
protein (339aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBM9_9MICO rbh
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:KJQ54081.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein; K07795 putative tricarboxylic transport membrane protein rbh
scnpilot_solids2_trim150_scaffold_86_36
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21900..22445
-----------------
DNA (546bp)
protein (182aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K219_9MICO
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:KJQ54082.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein; K07794 putative tricarboxylic transport membrane protein
scnpilot_solids2_trim150_scaffold_86_37
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

22445..23998
-----------------
DNA (1554bp)
protein (518aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E79C85 rbh
hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_86_38
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24041..24829
-----------------
DNA (789bp)
protein (263aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003114F71 rbh
Sulfite exporter TauE/SafE {ECO:0000313|EMBL:KJL29753.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
permease; K07090 rbh
scnpilot_solids2_trim150_scaffold_86_39
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24886..25338
-----------------
DNA (453bp)
protein (151aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034868FF
UPF0336 protein RU09_06765 {ECO:0000256|HAMAP-Rule:MF_00799}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_86_40
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25338..25739
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030EFB96
Acyl dehydratase {ECO:0000313|EMBL:KDA07092.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
acyl dehydratase
scnpilot_solids2_trim150_scaffold_86_41
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25741..26883
-----------------
DNA (1143bp)
protein (381aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
UDP-N-acetylmuramate dehydrogenase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] rbh
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K208_9MICO rbh
scnpilot_solids2_trim150_scaffold_86_42
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26916..27260
-----------------
DNA (345bp)
protein (115aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C41B7
Uncharacterized protein {ECO:0000313|EMBL:KJL22297.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_86_43
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27336..28538)
-----------------
DNA (1203bp)
protein (401aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KJL23270.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KJL23270.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
aspartate aminotransferase n=1 Tax=Microbacterium barkeri RepID=UPI000314066C rbh
aspC; aspartate/tyrosine/aromatic aminotransferase rbh
scnpilot_solids2_trim150_scaffold_86_44
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28576..28992)
-----------------
DNA (417bp)
protein (139aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F6F1FF
Uncharacterized protein {ECO:0000313|EMBL:KJL23271.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_86_45
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29063..29527)
-----------------
DNA (465bp)
protein (155aa)
4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993}; Short=HMG aldolase {ECO:0000256|RuleBase:RU004338};; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004338};; EC=4.1.3.17 {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993};; Oxaloacetate decarboxylase {ECO:0000256|RuleBase:RU004338}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
ribonuclease n=1 Tax=Promicromonospora sukumoe RepID=UPI00037DFCD3
ribonuclease activity A regulator; K02553 regulator of ribonuclease activity A
scnpilot_solids2_trim150_scaffold_86_46
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29700..31295)
-----------------
DNA (1596bp)
protein (532aa)
Isocitrate lyase {ECO:0000313|EMBL:KJL33279.1}; EC=4.1.3.1 {ECO:0000313|EMBL:KJL33279.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
isocitrate lyase (EC:4.1.3.1) rbh
isocitrate lyase n=1 Tax=Microbacterium yannicii RepID=UPI00031CDEEF rbh
scnpilot_solids2_trim150_scaffold_86_47
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31325..32983)
-----------------
DNA (1659bp)
protein (553aa)
Malate synthase {ECO:0000256|RuleBase:RU000555}; EC=2.3.3.9 {ECO:0000256|RuleBase:RU000555};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
aceB; malate synthase; K01638 malate synthase [EC:2.3.3.9] rbh
malate synthase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003652E68 rbh
scnpilot_solids2_trim150_scaffold_86_48
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33114..34565
-----------------
DNA (1452bp)
protein (484aa)
XRE family transcriptional regulator n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBL1_9MICO rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:EQM73249.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_86_49
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34636..36129)
-----------------
DNA (1494bp)
protein (498aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002DC85C5 rbh
Purine catabolism regulatory protein-like family protein {ECO:0000313|EMBL:KJL23278.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
regulator of polyketide synthase expression; K09684 purine catabolism regulatory protein rbh
scnpilot_solids2_trim150_scaffold_86_50
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36226..37584
-----------------
DNA (1359bp)
protein (453aa)
4-aminobutyrate aminotransferase GabT {ECO:0000313|EMBL:KJL33271.1}; EC=2.6.1.19 {ECO:0000313|EMBL:KJL33271.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
gabT; 4-aminobutyrate aminotransferase; K07250 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase [EC:2.6.1.19 2.6.1.22] rbh
4-aminobutyrate aminotransferase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034499FD rbh
scnpilot_solids2_trim150_scaffold_86_51
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37669..39141
-----------------
DNA (1473bp)
protein (491aa)
gabD; succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
aldehyde dehydrogenase n=1 Tax=Microbacterium paraoxydans RepID=UPI00036DB38E rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KDA07102.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids2_trim150_scaffold_86_52
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39169..40530
-----------------
DNA (1362bp)
protein (454aa)
Succinate-semialdehyde dehydrogenase [NADP(+)] 1 {ECO:0000313|EMBL:KJL23283.1}; EC=1.2.1.79 {ECO:0000313|EMBL:KJL23283.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
NAD-dependent aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KCC3_9MICO rbh
scnpilot_solids2_trim150_scaffold_86_53
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40718..42442
-----------------
DNA (1725bp)
protein (575aa)
thiamine pyrophosphate-requiring enzyme; K00156 pyruvate dehydrogenase (quinone) [EC:1.2.5.1] rbh
Pyruvate dehydrogenase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBJ3_9MICO rbh
Pyruvate dehydrogenase {ECO:0000313|EMBL:EQM73229.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
scnpilot_solids2_trim150_scaffold_86_trna_1
unknown

Not on your lists

42616..42688
-----------------
DNA (73bp)
transferRNA Trp
scnpilot_solids2_trim150_scaffold_86_54
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42730..42996
-----------------
DNA (267bp)
protein (89aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034BF101
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
scnpilot_solids2_trim150_scaffold_86_55
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43044..44090
-----------------
DNA (1047bp)
protein (349aa)
transcription antitermination factor NusG n=1 Tax=Microbacterium barkeri RepID=UPI0002EB9218 rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
nusG; transcription antiterminator; K02601 transcriptional antiterminator NusG rbh
scnpilot_solids2_trim150_scaffold_86_56
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


44212..44643
-----------------
DNA (432bp)
protein (144aa)
50S ribosomal protein L11 n=1 Tax=Microbacterium barkeri RepID=UPI0003703F1A
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
scnpilot_solids2_trim150_scaffold_86_57
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists


44655..45344
-----------------
DNA (690bp)
protein (230aa)
50S ribosomal protein L1 n=1 Tax=Microbacterium yannicii RepID=UPI0002FBF032 rbh
rplA; ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_86_58
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

45542..46354
-----------------
DNA (813bp)
protein (271aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F66452 rbh
L-cystine-binding protein TcyA {ECO:0000313|EMBL:KJL20900.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
tcyA; amino acid ABC transporter periplasmic protein; K02424 cystine transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_86_59
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

46364..47026
-----------------
DNA (663bp)
protein (221aa)
Cysteine ABC transporter permease n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K1W8_9MICO rbh
L-cystine transport system permease protein TcyB {ECO:0000313|EMBL:KJQ54117.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
polar amino acid ABC transporter inner membrane subunit; K10009 cystine transport system permease protein rbh
Displaying items 31-60 of 291 in total

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