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scnpilot_solids2_trim150_scaffold_166

Search features with annotation key words

Displaying items 1-30 of 134 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_166_1
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..91)
-----------------
DNA (90bp)
protein (30aa)
hypothetical protein n=1 Tax=Microbacterium RepID=UPI0003765A9D
Uncharacterized protein {ECO:0000313|EMBL:KJQ53331.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
scnpilot_solids2_trim150_scaffold_166_2
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(180..1241)
-----------------
DNA (1062bp)
protein (354aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KYH5_9MICO
Fibronectin type III domain protein {ECO:0000313|EMBL:KJQ53297.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
fibronectin type III domain-containing protein
scnpilot_solids2_trim150_scaffold_166_3
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1354..1935)
-----------------
DNA (582bp)
protein (194aa)
DNA-3-methyladenine glycosylase 1 {ECO:0000313|EMBL:KJL29484.1}; EC=3.2.2.20 {ECO:0000313|EMBL:KJL29484.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
tag; 3-methyladenine DNA glycosylase (EC:3.2.2.20)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KN49_9MICO rbh
scnpilot_solids2_trim150_scaffold_166_4
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1932..2315)
-----------------
DNA (384bp)
protein (128aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI00036C618E
Uncharacterized protein {ECO:0000313|EMBL:KDA04747.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
cupin domain-containing protein
scnpilot_solids2_trim150_scaffold_166_5
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2453..4537)
-----------------
DNA (2085bp)
protein (695aa)
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:KJL33557.1}; EC=1.3.99.- {ECO:0000313|EMBL:KJL33557.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
acyl-CoA dehydrogenase; K00232 acyl-CoA oxidase [EC:1.3.3.6] rbh
acyl-CoA dehydrogenase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034AB1DC rbh
scnpilot_solids2_trim150_scaffold_166_6
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4697..5518)
-----------------
DNA (822bp)
protein (274aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1LAJ0_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG64083.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
YaeC family protein; K02073 D-methionine transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_166_7
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5582..6253)
-----------------
DNA (672bp)
protein (224aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1LNV6_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG64084.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
D-methionine ABC transporter permease
scnpilot_solids2_trim150_scaffold_166_8
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6250..7035)
-----------------
DNA (786bp)
protein (262aa)
ABC transporter n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1LAD1_9MICO rbh
ABC transporter {ECO:0000313|EMBL:ERG64013.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
metN.1; D-methionine ABC transporter ATP-binding protein; K02071 D-methionine transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_166_9
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7130..7537
-----------------
DNA (408bp)
protein (136aa)
hypothetical protein n=1 Tax=Microbacterium RepID=UPI00036ACEF6
Uncharacterized protein {ECO:0000313|EMBL:KDA05443.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
organic hydroperoxide resistance protein
scnpilot_solids2_trim150_scaffold_166_10
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7555..9540)
-----------------
DNA (1986bp)
protein (662aa)
recQ; superfamily II DNA helicase; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] rbh
ATP-dependent DNA helicase RecQ n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KN40_9MICO rbh
Contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIP93604.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids2_trim150_scaffold_166_11
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9629..9925
-----------------
DNA (297bp)
protein (99aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000347A71B
Acetyltransferase {ECO:0000313|EMBL:KDA05445.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_166_12
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10101..10646
-----------------
DNA (546bp)
protein (182aa)
acyl esterase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034DC274
Contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIP93608.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
acyl esterase
scnpilot_solids2_trim150_scaffold_166_13
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10856..13381
-----------------
DNA (2526bp)
protein (842aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C1252 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYT57892.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
putative ABC transporter ATP-binding protein; K02006 cobalt/nickel transport system ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_166_14
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13391..14017
-----------------
DNA (627bp)
protein (209aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034D427A
Vibriobactin utilization protein ViuB {ECO:0000313|EMBL:KJL33550.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
Siderophore-interacting protein
scnpilot_solids2_trim150_scaffold_166_15
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14028..14387)
-----------------
DNA (360bp)
protein (120aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000319F0FE
Conserved protein of unknown function, possible toxin MazF9
scnpilot_solids2_trim150_scaffold_166_16
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14384..14599)
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002DAA420
Antitoxin MazE9 {ECO:0000313|EMBL:KJL33544.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_166_17
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14761..17040)
-----------------
DNA (2280bp)
protein (760aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Salinispora pacifica RepID=UPI0003771245 rbh
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:AGP54812.1}; TaxID=1343740 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_166_18
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17075..18007)
-----------------
DNA (933bp)
protein (311aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) RepID=A4XCV9_SALTO rbh
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABP56766.1}; TaxID=369723 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
scnpilot_solids2_trim150_scaffold_166_19
Streptomyces sp. 150FB, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18004..18948)
-----------------
DNA (945bp)
protein (315aa)
diguanylate cyclase n=1 Tax=Streptomyces rapamycinicus RepID=UPI000382F6C8 rbh
Diguanylate cyclase {ECO:0000313|EMBL:KIF77899.1}; TaxID=1576605 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 150FB.;"
peptide ABC transporter integral membrane protein rbh
scnpilot_solids2_trim150_scaffold_166_20
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(19034..20884)
-----------------
DNA (1851bp)
protein (617aa)
Extracellular solute-binding protein family 5 n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LZB6_ACIFD rbh
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:KJE77213.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_166_21
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21113..22276)
-----------------
DNA (1164bp)
protein (388aa)
acyl-CoA dehydrogenase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349EA21 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EYT57887.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
acyl-CoA dehydrogenase domain-containing protein rbh
scnpilot_solids2_trim150_scaffold_166_22
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22418..23437)
-----------------
DNA (1020bp)
protein (340aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F709E1 rbh
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin {ECO:0000313|EMBL:EYT57886.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
D-alanyl-D-alanine carboxypeptidase
scnpilot_solids2_trim150_scaffold_166_23
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

23468..24520
-----------------
DNA (1053bp)
protein (351aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000348508C rbh
DNA repair photolyase rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_166_24
unknown

Not on your lists

comp(24577..24762)
-----------------
DNA (186bp)
protein (62aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_166_25
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24874..27129)
-----------------
DNA (2256bp)
protein (752aa)
DEAD-box ATP-dependent RNA helicase CshA {ECO:0000313|EMBL:KJL26248.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KJL26248.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003467893 rbh
superfamily II DNA and RNA helicase rbh
scnpilot_solids2_trim150_scaffold_166_26
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27379..28281
-----------------
DNA (903bp)
protein (301aa)
Aldose 1-epimerase {ECO:0000313|EMBL:KJL26665.1}; EC=5.1.3.3 {ECO:0000313|EMBL:KJL26665.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349909B rbh
galactose mutarotase rbh
scnpilot_solids2_trim150_scaffold_166_27
Brevibacterium casei, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28348..29616)
-----------------
DNA (1269bp)
protein (423aa)
alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Brevibacterium casei S18 RepID=K9AZ26_9MICO rbh
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase {ECO:0000313|EMBL:EKU46770.1}; TaxID=1229781 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium casei S18.;"
scnpilot_solids2_trim150_scaffold_166_28
Brevibacterium linens, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29750..31435)
-----------------
DNA (1686bp)
protein (562aa)
lactate permease n=1 Tax=Brevibacterium linens RepID=UPI000050FB3C rbh
L-lactate transport {ECO:0000313|EMBL:KHS50546.1}; TaxID=1703 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium linens.;"
L-lactate transport; K03303 lactate transporter, LctP family rbh
scnpilot_solids2_trim150_scaffold_166_29
Brevibacterium casei, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31625..32371
-----------------
DNA (747bp)
protein (249aa)
Transcriptional regulator, GntR family protein n=1 Tax=Brevibacterium casei S18 RepID=K9AHK7_9MICO rbh
Transcriptional regulator, GntR family protein {ECO:0000313|EMBL:EKU46769.1}; TaxID=1229781 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium casei S18.;"
transcriptional regulator, GntR family; K05799 GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
scnpilot_solids2_trim150_scaffold_166_30
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32394..35672)
-----------------
DNA (3279bp)
protein (1093aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034BA311 rbh
Swarming motility protein SwrC {ECO:0000313|EMBL:KJL33377.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
cation/multidrug efflux pump; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
Displaying items 1-30 of 134 in total

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