ggKbase home page

scnpilot_solids2_trim150_scaffold_3231_8

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_69_103

partial RP 27 / 55 MC: 1 BSCG 30 / 51 MC: 5 ASCG 7 / 38 MC: 2
Location: comp(6962..7375)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Rhodanobacter denitrificans RepID=I4WX86_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 95.6
  • Coverage: 137.0
  • Bit_score: 259
  • Evalue 1.60e-66
alternative sigma factor RpoH similarity KEGG
DB: KEGG
  • Identity: 95.6
  • Coverage: 137.0
  • Bit_score: 259
  • Evalue 5.00e-67
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 137.0
  • Bit_score: 259
  • Evalue 2.20e-66

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 414
ATGAACGCGGCCGAGGTGAGCACGGTGGCGAAGGATCTGGGCGTACCCGAGGCGACCGTGCGCGAGATGGAGTCGCGCCTGTCCGGCCGCGACATCGGTTTCGAGGCTCCGGTCGATGCCGACGACGACGCCAAGCCGGCGCCGGCAGCGTTCCTGGTCGACGATGGCGCCGACCCGTACGAGAACGTGGCCGACGAGGACTACGCCGACAACCAGATGGAGACGCTTGGCGACGCGCTGGACCAGCTGGATCCGCGTTCGCGCGACATCATCCAGCGCCGCTGGCTGGACGACTCCAGCAAGGCCACGCTGCAGGACCTGGCCGACGAGTACGGCGTGTCCGCCGAGCGCATCCGCCAGATCGAGGCGAACGCGATGAAGAAGATGCGCGGCCTGTTCGCGGCGGTGGCCTGA
PROTEIN sequence
Length: 138
MNAAEVSTVAKDLGVPEATVREMESRLSGRDIGFEAPVDADDDAKPAPAAFLVDDGADPYENVADEDYADNQMETLGDALDQLDPRSRDIIQRRWLDDSSKATLQDLADEYGVSAERIRQIEANAMKKMRGLFAAVA*