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ACD12_185

Alias: ACD12_27896.6260.13

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_185_1

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comp(2..229)
DNA (228bp) protein (76aa)
30S ribosomal protein S17
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=2 to=73 evalue=1.1e-32 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S17 (db=HMMPfam db_id=PF00366 from=7 to=74 evalue=8.9e-23 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=76 evalue=1.5e-22 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD12_185_2

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comp(226..423)
DNA (198bp) protein (66aa)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=8 to=62 evalue=9.9e-08 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=9 to=62 evalue=0.0012 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_185_3

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comp(430..840)
DNA (411bp) protein (137aa)
50S ribosomal protein L16
seg (db=Seg db_id=seg from=121 to=136)
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=1.1e-50 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein L16p/L10e (db=superfamily db_id=SSF54686 from=3 to=134 evalue=2.3e-44 interpro_id=IPR016180 interpro_description=Ribosomal protein L10e/L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_185_4

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comp(842..1480)
DNA (639bp) protein (213aa)
30S ribosomal protein S3
Ribosomal protein S3 n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPB3_9FIRM (db=UNIREF evalue=1.0e-43 bit_score=179.0 identity=41.98 coverage=94.8356807511737)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=171 to=205 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=212 evalue=7.8e-54 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD12_185_5

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comp(1481..1882)
DNA (402bp) protein (134aa)
50S ribosomal protein L22
seg (db=Seg db_id=seg from=108 to=129)
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=8 to=108 evalue=3.6e-20 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=1 to=110 evalue=4.2e-20 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_185_6

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comp(1885..2661)
DNA (777bp) protein (259aa)
rplB; 50S ribosomal protein L2
seg (db=Seg db_id=seg from=3 to=16)
seg (db=Seg db_id=seg from=210 to=225)
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=1 to=258 evalue=2.3e-124 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
ACD12_185_7

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comp(2664..2951)
DNA (288bp) protein (96aa)
seg (db=Seg db_id=seg from=59 to=73)
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=89 evalue=8.4e-18 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=95 evalue=4.7e-17 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=3 to=92 evalue=1.2e-14 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD12_185_8

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comp(2938..3570)
DNA (633bp) protein (211aa)
50S ribosomal protein L4 n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VR30_9CORY (db=UNIREF evalue=1.0e-35 bit_score=152.0 identity=39.11 coverage=94.3127962085308)
hypothetical protein
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=202 evalue=4.2e-55 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=14 to=202 evalue=6.9e-55 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_185_9
GWC2_OP11_ACD12-rel_34_23, Roizmanbacteria, Microgenomates, Bacteria

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comp(4311..4559)
DNA (249bp) protein (83aa)
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=53 evalue=2.7e-06)
50S ribosomal protein L3 {ECO:0000313|EMBL:KKP63076.1}; TaxID=1618484 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC2_34_23.;"
ACD12_185_10

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comp(4760..5068)
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8P4_9CLOT (db=UNIREF evalue=6.0e-31 bit_score=135.0 identity=61.0 coverage=96.1165048543689)
rpsJ; 30S ribosomal protein S10
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=4 to=102 evalue=6.1e-54 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER (db=HMMPanther db_id=PTHR11700 from=1 to=102 evalue=8.0e-51 interpro_id=IPR001848 interpro_description=Ribosomal protein S10 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_185_11
GWA2_OP11_34_18_partial, Roizmanbacteria, Microgenomates, Bacteria

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comp(5155..5907)
DNA (753bp) protein (251aa)
elongation factor Tu
Elongation factor Tu n=1 Tax=bacterium S5 RepID=D3BZR9_9BACT (db=UNIREF evalue=2.0e-95 bit_score=352.0 identity=72.46 coverage=92.8286852589641)
TRANSLATION FACTOR (db=HMMPanther db_id=PTHR23115 from=17 to=184 evalue=9.3e-94)
ELONGATION FACTOR TU (EF-TU) (db=HMMPanther db_id=PTHR23115:SF31 from=17 to=184 evalue=9.3e-94 interpro_id=IPR004541 interpro_description=Translation elongation factor EFTu/EF1A, bacterial/organelle GO=Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD12_185_12
GWC1_OP11_37_12, Roizmanbacteria, Microgenomates, Bacteria

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comp(5855..6298)
DNA (444bp) protein (148aa)
hypothetical protein
seg (db=Seg db_id=seg from=135 to=146)
TRANSLATION FACTOR (db=HMMPanther db_id=PTHR23115 from=1 to=144 evalue=3.1e-88)
ELONGATION FACTOR TU (EF-TU) (db=HMMPanther db_id=PTHR23115:SF31 from=1 to=144 evalue=3.1e-88 interpro_id=IPR004541 interpro_description=Translation elongation factor EFTu/EF1A, bacterial/organelle GO=Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Displaying 12 items

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