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ACD12_345

Alias: ACD12_147118.2005.5

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_345_1
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

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1..261
DNA (261bp) protein (87aa)
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=1 to=84 evalue=4.0e-15 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=1 to=85 evalue=1.2e-12 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=1 to=85 evalue=1.4e-12 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.1490.10 from=30 to=85 evalue=1.7e-08)
ACD12_345_2

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265..813
DNA (549bp) protein (183aa)
rplF; ribosomal protein L6
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=155 to=163 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=177 evalue=8.3e-88 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=182 evalue=8.4e-71)
ACD12_345_3

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823..1140
DNA (318bp) protein (106aa)
rplR; 50S ribosomal protein L18
seg (db=Seg db_id=seg from=40 to=56)
seg (db=Seg db_id=seg from=2 to=22)
Translational machinery components (db=superfamily db_id=SSF53137 from=14 to=105 evalue=6.0e-25)
ACD12_345_4
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

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1137..1379
DNA (243bp) protein (81aa)
seg (db=Seg db_id=seg from=54 to=65)
seg (db=Seg db_id=seg from=2 to=17)
Ribosomal_S5 (db=HMMPfam db_id=PF00333 from=10 to=53 evalue=2.4e-17 interpro_id=IPR013810 interpro_description=Ribosomal protein S5, N-terminal GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL S SUBUNIT (db=HMMPanther db_id=PTHR13718 from=9 to=53 evalue=8.5e-15 interpro_id=IPR000851 interpro_description=Ribosomal protein S5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_345_5
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

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1373..1612
DNA (240bp) protein (80aa)
seg (db=Seg db_id=seg from=50 to=67)
Ribosomal_S5_C (db=HMMPfam db_id=PF03719 from=16 to=78 evalue=1.5e-22 interpro_id=IPR005324 interpro_description=Ribosomal protein S5, C-terminal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S5 (db=HMMPanther db_id=PTHR13718:SF2 from=1 to=78 evalue=4.8e-17)
RIBOSOMAL S SUBUNIT (db=HMMPanther db_id=PTHR13718 from=1 to=78 evalue=4.8e-17 interpro_id=IPR000851 interpro_description=Ribosomal protein S5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD12_345_6
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

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1617..1838
DNA (222bp) protein (74aa)
seg (db=Seg db_id=seg from=21 to=44)
Ribosomal proteins L15p and L18e (db=superfamily db_id=SSF52080 from=11 to=64 evalue=5.2e-15 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
50S RIBOSOMAL PROTEIN L15 (db=HMMPanther db_id=PTHR12934:SF2 from=15 to=64 evalue=2.7e-12)
50S RIBOSOMAL PROTEIN L15 (db=HMMPanther db_id=PTHR12934 from=15 to=64 evalue=2.7e-12 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD12_345_7

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1844..2038
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=14 to=31)
SECY/SEC61-ALPHA FAMILY MEMBER (db=HMMPanther db_id=PTHR10906 from=1 to=65 evalue=1.7e-12 interpro_id=IPR002208 interpro_description=SecY protein GO=Biological Process: protein transport (GO:0015031), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: membrane (GO:0016020))
PROTEIN TRANSLOCASE SECY SUBUNIT (db=HMMPanther db_id=PTHR10906:SF2 from=1 to=65 evalue=1.7e-12)
Preprotein translocase SecY subunit (db=superfamily db_id=SSF103491 from=1 to=64 evalue=3.0e-10 interpro_id=IPR002208 interpro_description=SecY protein GO=Biological Process: protein transport (GO:0015031), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: membrane (GO:0016020))
Displaying 7 items

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