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ACD12_380

Alias: ACD12p_3847.10936.13

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_380_1

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1..186
DNA (186bp) protein (62aa)
1..186 + ( gc_cont=0.312)
Uncharacterized protein {ECO:0000313|EMBL:EKE13619.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_380_2

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179..1699
DNA (1521bp) protein (507aa)
N-6 DNA methylase
N-6 DNA methylase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=4 to=506 evalue=2.5e-115)
ACD12_380_3

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1702..2829
DNA (1128bp) protein (376aa)
restriction modification system DNA specificity domain-containing protein
coiled-coil (db=Coil db_id=coil from=342 to=363 evalue=NA)
coiled-coil (db=Coil db_id=coil from=137 to=165 evalue=NA)
DNA methylase specificity domain (db=superfamily db_id=SSF116734 from=178 to=371 evalue=1.0e-25)
ACD12_380_4

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2872..3486
DNA (615bp) protein (205aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LHI0_9FIRM (db=UNIREF evalue=3.0e-30 bit_score=135.0 identity=42.57 coverage=95.609756097561)
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=2 to=204 evalue=2.2e-35 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=83 to=201 evalue=5.6e-26 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
ACD12_380_5

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3490..3729
DNA (240bp) protein (80aa)
hypothetical protein
seg (db=Seg db_id=seg from=32 to=40)
hypothetical protein alias=ACD12p_3847.10936.13_5,ACD12p_3847.10936.13G0005,ACD12_C00380G00005 id=6024 tax=ACD12 species=Nocardioides sp. JS614 genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OP11 organism_desc=
Uncharacterized protein {ECO:0000313|EMBL:EKE13623.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_380_6

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3752..4255
DNA (504bp) protein (168aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Providencia stuartii RepID=A0MD74_PROST (db=UNIREF evalue=6.0e-55 bit_score=216.0 identity=58.43 coverage=98.2142857142857)
(db=HMMPfam db_id=PF08937 from=5 to=121 evalue=1.3e-20 interpro_id=IPR015032 interpro_description=MTH538 TIR-like domain)
Uncharacterized protein {ECO:0000313|EMBL:EKE13624.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_380_7

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4252..5172
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Providencia stuartii RepID=A0MD75_PROST (db=UNIREF evalue=1.0e-46 bit_score=191.0 identity=40.2 coverage=94.4625407166124)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
seg (db=Seg db_id=seg from=43 to=54)
ACD12_380_8

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5233..5877
DNA (645bp) protein (215aa)
seg (db=Seg db_id=seg from=78 to=89)
seg (db=Seg db_id=seg from=168 to=188)
(db=HMMPfam db_id=PF03118 from=7 to=61 evalue=9.5e-12 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
C-terminal domain of RNA polymerase alpha subunit (db=superfamily db_id=SSF47789 from=4 to=66 evalue=2.2e-10 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
ACD12_380_9

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5858..6199
DNA (342bp) protein (114aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=81 to=90)
ACD12_380_10

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6218..6823
DNA (606bp) protein (202aa)
6218..6823 + ( gc_cont=0.297)
Uncharacterized protein {ECO:0000313|EMBL:EKE13628.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_380_11

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6826..7731
DNA (906bp) protein (302aa)
seg (db=Seg db_id=seg from=259 to=266)
(db=HMMPfam db_id=PF02810 from=6 to=25 evalue=1.6e-10 interpro_id=IPR004027 interpro_description=SEC-C motif)
Sec-C motif (db=superfamily db_id=SSF103642 from=3 to=24 evalue=7.9e-07)
Uncharacterized protein {ECO:0000313|EMBL:EKE13629.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_380_12

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comp(7814..8644)
DNA (831bp) protein (277aa)
seg (db=Seg db_id=seg from=198 to=217)
Uncharacterized protein {ECO:0000313|EMBL:EKE13630.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_380_13

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8734..10152
DNA (1419bp) protein (473aa)
pyrimidine-nucleoside phosphorylase
pyrimidine-nucleoside phosphorylase
THYMID_PHOSPHORYLASE (db=PatternScan db_id=PS00647 from=144 to=159 evalue=0.0 interpro_id=IPR017872 interpro_description=Pyrimidine-nucleoside phosphorylase, conserved site GO=Biological Process: pyrimidine base metabolic process (GO:0006206))
ACD12_380_14

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comp(10161..10673)
DNA (513bp) protein (171aa)
nuclease (SNase-like)
Putative Micrococcal nuclease n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MG79_9BACT (db=UNIREF evalue=3.0e-15 bit_score=84.3 identity=40.98 coverage=67.8362573099415)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=32 to=45)
ACD12_380_15

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comp(10670..10834)
DNA (165bp) protein (55aa)
(db=HMMPfam db_id=PF04014 from=16 to=52 evalue=7.1e-07 interpro_id=IPR007159 interpro_description=Transcription regulator AbrB/SpoV, predicted)
Uncharacterized protein {ECO:0000313|EMBL:EKE13633.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 15 items

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