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ACD37_77

Alias: ACD37_481060.13756.7

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD37_77_1
R_OP11_Woesebacteria_39_10, Woesebacteria, Microgenomates, Bacteria

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comp(2..754)
DNA (753bp) protein (251aa)
putative Peptidase S58 DmpA
DmpA/ArgJ-like (db=superfamily db_id=SSF56266 from=2 to=203 evalue=2.8e-21 interpro_id=IPR016117 interpro_description=Peptidase S58 DmpA/arginine biosynthesis protein ArgJ)
Peptidase_S58 (db=HMMPfam db_id=PF03576 from=4 to=151 evalue=1.8e-14 interpro_id=IPR005321 interpro_description=Peptidase S58, DmpA)
no description (db=Gene3D db_id=G3DSA:3.60.70.12 from=3 to=203 evalue=1.6e-11 interpro_id=IPR005321 interpro_description=Peptidase S58, DmpA)
ACD37_77_2

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comp(926..1060)
DNA (135bp) protein (45aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D4XZY5_9CHLR (db=UNIREF evalue=1.0e-08 bit_score=62.4 identity=62.79 coverage=93.3333333333333)
Uncharacterized protein {ECO:0000313|EMBL:EKD86054.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_77_3

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comp(1105..1362)
DNA (258bp) protein (86aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=82)
Uncharacterized protein {ECO:0000313|EMBL:EKD86055.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_77_4

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1448..1918
DNA (471bp) protein (157aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=3 to=19)
hypothetical protein alias=ACD37_481060.13756.7G0004,ACD37_481060.13756.7_4,ACD37_C00077G00004 id=41367 tax=ACD37 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OP11 organism_desc=OP11
ACD37_77_5

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1921..3081
DNA (1161bp) protein (387aa)
hypothetical protein
seg (db=Seg db_id=seg from=7 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
DUF3048 (db=HMMPfam db_id=PF11258 from=72 to=374 evalue=4.9e-70 interpro_id=IPR021416 interpro_description=Protein of unknown function DUF3048)
ACD37_77_6

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3190..3765
DNA (576bp) protein (192aa)
Transcriptional regulator
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9G3_9ARCH (db=UNIREF evalue=2.0e-28 bit_score=128.0 identity=38.1 coverage=97.3958333333333)
Uncharacterized protein {ECO:0000313|EMBL:EKD86058.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_77_7

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3762..5102
DNA (1341bp) protein (447aa)
hypothetical protein
Protein-export membrane protein SecD n=2 Tax=Selenomonas RepID=D4S7Z7_9FIRM (db=UNIREF evalue=5.0e-79 bit_score=298.0 identity=44.22 coverage=79.6420581655481)
seg (db=Seg db_id=seg from=6 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=343 to=365)
ACD37_77_8
R_OP11_Levybacteria_38_21, Levybacteria, Microgenomates, Bacteria

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5194..6123
DNA (930bp) protein (310aa)
Protein translocase subunit SecF
transmembrane_regions (db=TMHMM db_id=tmhmm from=277 to=299)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=153)
seg (db=Seg db_id=seg from=43 to=58)
ACD37_77_9

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6120..6551
DNA (432bp) protein (144aa)
hypothetical protein
MutT/NUDIX family protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VS93_CLOBO (db=UNIREF evalue=3.0e-28 bit_score=127.0 identity=50.74 coverage=91.6666666666667)
Nudix (db=superfamily db_id=SSF55811 from=10 to=124 evalue=2.3e-26 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=10 to=128 evalue=1.8e-22 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD37_77_10

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comp(6540..6992)
DNA (453bp) protein (151aa)
hypothetical protein
YqeY (db=HMMPfam db_id=PF09424 from=3 to=148 evalue=8.6e-51 interpro_id=IPR019004 interpro_description=Protein of unknown function YOR215C, mitochondrial)
GatB/YqeY motif (db=superfamily db_id=SSF89095 from=1 to=149 evalue=1.3e-41 interpro_id=IPR003789 interpro_description=Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO=Biological Process: translation (GO:0006412), Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884))
no description (db=Gene3D db_id=G3DSA:1.10.1510.10 from=1 to=92 evalue=8.6e-21)
ACD37_77_11

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comp(7078..7863)
DNA (786bp) protein (262aa)
ABC-type multidrug transport system permease component
seg (db=Seg db_id=seg from=115 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
ACD37_77_12

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comp(7860..8777)
DNA (918bp) protein (306aa)
ybhF_2; ABC-type multidrug transport system ATPase component
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF16 from=6 to=242 evalue=1.0e-77)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=6 to=242 evalue=1.0e-77)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=6 to=259 evalue=7.0e-57)
ACD37_77_13

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comp(8822..9112)
DNA (291bp) protein (97aa)
polyA polymerase
Poly A polymerase C-terminal region-like (db=superfamily db_id=SSF81891 from=42 to=95 evalue=6.8e-08)
polyA polymerase; K00970 poly(A) polymerase [EC:2.7.7.19] alias=ACD37_481060.13756.7G0013,ACD37_481060.13756.7_13,ACD37_C00077G00013 id=41370 tax=ACD37 species=unknown genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes organism_group=OP11 organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:EKD86053.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_77_14
R_OP11_Levybacteria_39_10, Levybacteria, Microgenomates, Bacteria

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comp(9090..9725)
DNA (636bp) protein (212aa)
cca; CCA-adding enzyme (EC:2.7.7.72)
seg (db=Seg db_id=seg from=190 to=200)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=1 to=188 evalue=6.7e-39)
TRNA NUCLEOTIDYLTRANSFERASE (db=HMMPanther db_id=PTHR13734:SF7 from=1 to=188 evalue=6.7e-39)
ACD37_77_15

Not on your lists

10340..12037
DNA (1698bp) protein (566aa)
exonuclease RecJ (EC:3.1.-.-)
exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Geobacillus RepID=C6QKN0_9BACI (db=UNIREF evalue=2.0e-89 bit_score=333.0 identity=37.85 coverage=95.9363957597173)
seg (db=Seg db_id=seg from=416 to=431)
ACD37_77_16

Not on your lists

comp(12045..12320)
DNA (276bp) protein (92aa)
12045..12320 - (rbs_motif=ATAAT rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD86047.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_77_17

Not on your lists


12459..13790
DNA (1332bp) protein (444aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
ASPARTYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594:SF5 from=89 to=443 evalue=1.5e-125 interpro_id=IPR018153 interpro_description=Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aspartate-tRNA ligase activity (GO:0004815), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: aspartyl-tRNA aminoacyl
ASPARTYL/LYSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594 from=89 to=443 evalue=1.5e-125 interpro_id=IPR018150 interpro_description=Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:00
tRNA-synt_2 (db=HMMPfam db_id=PF00152 from=120 to=443 evalue=7.9e-98 interpro_id=IPR004364 interpro_description=Aminoacyl-tRNA synthetase, class II (D/K/N) GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
Displaying 17 items

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