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scnpilot_solids1_trim150_scaffold_3601_curated_10

Organism: solids_Burkholderiales_2

partial RP 32 / 55 BSCG 32 / 51 MC: 1 ASCG 10 / 38
Location: 7230..7787

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=3 Tax=Pseudomonas aeruginosa RepID=U5AMK5_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 85.4
  • Coverage: 185.0
  • Bit_score: 312
  • Evalue 2.80e-82
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHB76830.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.5
  • Coverage: 185.0
  • Bit_score: 297
  • Evalue 1.30e-77
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 80.0
  • Coverage: 180.0
  • Bit_score: 287
  • Evalue 3.00e-75

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Taxonomy

Pandoraea sp. RB-44 → Pandoraea → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
ATGGGCACCCCCGTTGGCGACCGCGACAATTTGATCCTGGCGGTACAGACCGGAGACACGGCCGCCCTCTCCCGTTTGCTGGTGGTGTGCCAGGCCGATGCGCGCCGCTATGCGTACAAGCACTGCCACGCGAGCGATGTGGATGACGCGGTCCAGGAATCGCTGCTCATCATTTCCCGCAAGGTCAGCGGGCTCAAGGCGGCAGCTGCCTTTTCGTCGTGGCTGTTCACGGTCATCAAGCACGAATGCCGCAAGCTCGCGCGCATGATGCTCAAGCACGAGCCCTTGCCCGATGAAATGGCCGAGGAACTGCTGCTGCATCGCCCCGACGACGAATTGCGGATCGACCTCGTCAATGCCCTGGAGTCGTTGCCTGCCCACTACCTCGAAGTGGTGCTTCTGCGCGACTTCGAGGAGTTGACCATCGCCGAGATCGCCACCCGGCTCGGCGAGCAGCCTGGCGCGATCAAGAGCCGACTGCACCGCGCCCGTGAACTGGTGCGCGAATACATGCTTGATTGGGAACCGCCCTCGAAGCCTCACGCCTCGGCCAGGTAA
PROTEIN sequence
Length: 186
MGTPVGDRDNLILAVQTGDTAALSRLLVVCQADARRYAYKHCHASDVDDAVQESLLIISRKVSGLKAAAAFSSWLFTVIKHECRKLARMMLKHEPLPDEMAEELLLHRPDDELRIDLVNALESLPAHYLEVVLLRDFEELTIAEIATRLGEQPGAIKSRLHRARELVREYMLDWEPPSKPHASAR*