ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

Properties

Avg. coverage: 1.00 Longest contig: 8.49 Kbp Bin length: 1.84 Mbp GC content: 68.98 %

Contigs count: 1001 Features count: 2511 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 BSCG 24 / 51 MC: 2 ASCG 8 / 38

Displaying items 651-700 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_31343_curated Species: Microbacterium mangrovi (50%)	2	1273 bp	71.56	1.00	98.04
scnpilot_solids1_trim150_scaffold_38759_curated Species: Microbacterium mangrovi (50%)	2	2003 bp	69.15	1.00	84.47
scnpilot_solids1_trim150_scaffold_19521_curated Species: Microbacterium azadirachtae (50%)	2	1787 bp	70.84	1.00	94.68
scnpilot_solids1_trim150_scaffold_15140_curated Species: Arthrobacter crystallopoietes (50%)	2	2144 bp	68.19	1.00	94.45
scnpilot_solids1_trim150_scaffold_39380_curated Species: Microbacterium sp. C448 (50%)	2	984 bp	70.12	1.00	99.39
scnpilot_solids1_trim150_scaffold_29660_curated Species: Curtobacterium flaccumfaciens (50%)	2	1325 bp	72.83	1.00	94.64
scnpilot_solids1_trim150_scaffold_17894_curated Species: Microbacterium testaceum (50%)	2	1760 bp	70.74	1.00	96.82
scnpilot_solids1_trim150_scaffold_20178_curated Species: Microbacterium ginsengisoli (50%)	2	1749 bp	70.21	1.00	93.48
scnpilot_solids1_trim150_scaffold_20074_curated Species: Curtobacterium flaccumfaciens (50%)	2	1643 bp	68.78	1.00	81.80
scnpilot_solids1_trim150_scaffold_35948_curated Species: Kocuria rhizophila (50%)	2	1152 bp	69.88	1.00	100.26
scnpilot_solids1_trim150_scaffold_17804_curated Species: Microbacterium testaceum (50%)	2	1906 bp	67.26	1.00	71.14
scnpilot_solids1_trim150_scaffold_14529_curated Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)	2	2124 bp	69.02	1.00	99.72
scnpilot_solids1_trim150_scaffold_20078_curated Species: Microbacterium mangrovi (50%)	2	1755 bp	66.72	1.00	89.23
scnpilot_solids1_trim150_scaffold_34555_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1204 bp	68.36	1.00	93.69
scnpilot_solids1_trim150_scaffold_21204_curated Species: Microbacterium oxydans (50%)	2	1400 bp	69.07	1.00	79.07
scnpilot_solids1_trim150_scaffold_40981_curated Species: Microbacterium sp. C448 (50%)	2	1045 bp	69.57	1.00	85.84
scnpilot_solids1_trim150_scaffold_43645_curated Species: Microbacterium sp. CH12i (50%)	2	998 bp	68.14	1.00	100.40
scnpilot_solids1_trim150_scaffold_20437_curated Species: Knoellia flava (50%)	2	1709 bp	69.57	1.00	97.25
scnpilot_solids1_trim150_scaffold_20174_curated Species: Microbacterium mangrovi (50%)	2	1706 bp	69.23	1.00	94.26
scnpilot_solids1_trim150_scaffold_19126_curated Species: Leifsonia aquatica (100%)	2	1814 bp	71.61	1.00	100.06
scnpilot_solids1_trim150_scaffold_38738_curated Species: Intrasporangium chromatireducens (100%)	2	972 bp	71.91	1.00	100.00
scnpilot_solids1_trim150_scaffold_33841_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1148 bp	67.25	1.00	84.93
scnpilot_solids1_trim150_scaffold_34056_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1198 bp	63.44	1.00	60.85
scnpilot_solids1_trim150_scaffold_17361_curated Species: Microbacterium oleivorans (50%)	2	1807 bp	69.51	1.00	99.94
scnpilot_solids1_trim150_scaffold_18487_curated Species: Agreia bicolorata (50%)	2	1845 bp	65.09	1.00	54.31
scnpilot_solids1_trim150_scaffold_17178_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1956 bp	68.76	1.00	95.55
scnpilot_solids1_trim150_scaffold_22706_curated Species: Arthrobacter chlorophenolicus (100%)	2	1436 bp	68.25	1.00	99.65
scnpilot_solids1_trim150_scaffold_41283_curated Species: Microbacterium azadirachtae (100%)	2	1039 bp	69.87	1.00	97.59
scnpilot_solids1_trim150_scaffold_14859_curated Species: Microbacterium mangrovi (50%)	2	2163 bp	68.15	1.00	88.49
scnpilot_solids1_trim150_scaffold_24937_curated Species: Leucobacter sp. UCD-THU (50%)	2	1148 bp	69.95	1.00	88.85
scnpilot_solids1_trim150_scaffold_10122_curated Species: Microbacterium sp. UCD-TDU (50%)	2	2823 bp	65.89	1.00	83.21
scnpilot_solids1_trim150_scaffold_29774_curated Species: Microbacterium sp. TS-1 (50%)	2	1321 bp	70.78	1.00	98.79
scnpilot_solids1_trim150_scaffold_22495_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1599 bp	70.17	1.00	93.81
scnpilot_solids1_trim150_scaffold_29671_curated Species: Microbacterium mangrovi (100%)	2	1325 bp	72.23	1.00	99.40
scnpilot_solids1_trim150_scaffold_11979_curated Species: Microbacterium sp. C448 (50%)	2	2535 bp	65.80	1.00	53.14
scnpilot_solids1_trim150_scaffold_43493_curated Species: Arthrobacter phenanthrenivorans (50%)	2	1001 bp	66.73	1.00	100.70
scnpilot_solids1_trim150_scaffold_30555_curated Species: Microbacterium sp. C448 (50%)	2	1298 bp	69.72	1.00	100.31
scnpilot_solids1_trim150_scaffold_40438_curated Species: Intrasporangium chromatireducens (100%)	2	1056 bp	67.23	1.00	93.75
scnpilot_solids1_trim150_scaffold_37551_curated Species: Microbacterium sp. TS-1 (50%)	2	855 bp	67.49	1.00	93.68
scnpilot_solids1_trim150_scaffold_41812_curated Species: Arthrobacter phenanthrenivorans (100%)	2	866 bp	66.28	1.00	80.72
scnpilot_solids1_trim150_scaffold_30567_curated Species: Arthrobacter sp. SPG23 (50%)	2	1219 bp	68.33	1.00	83.92
scnpilot_solids1_trim150_scaffold_34206_curated Species: Microbacterium sp. SUBG005 (50%)	2	1188 bp	69.44	1.00	98.23
scnpilot_solids1_trim150_scaffold_37009_curated Species: Intrasporangium calvum (50%)	2	844 bp	68.36	1.00	75.00
scnpilot_solids1_trim150_scaffold_43718_curated Species: Arthrobacter phenanthrenivorans (100%)	2	938 bp	67.80	1.00	73.88
scnpilot_solids1_trim150_scaffold_37528_curated Species: Microbacterium sp. C448 (50%)	2	1111 bp	70.57	1.00	88.03
scnpilot_solids1_trim150_scaffold_20534_curated Species: Microbacterium sp. TS-1 (50%)	2	1726 bp	69.76	1.00	95.60
scnpilot_solids1_trim150_scaffold_31743_curated Species: Arthrobacter phenanthrenivorans (100%)	2	1261 bp	67.49	1.00	100.16
scnpilot_solids1_trim150_scaffold_15661_curated Species: Microbacterium sp. TS-1 (50%)	2	2089 bp	67.59	1.00	87.89
scnpilot_solids1_trim150_scaffold_19147_curated Species: Arthrobacter chlorophenolicus (50%)	2	1471 bp	66.89	1.00	96.06
scnpilot_solids1_trim150_scaffold_23540_curated Species: Microbacterium azadirachtae (50%)	2	1501 bp	66.62	1.00	91.94

Displaying items 651-700 of 1001 in total

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Micrococcales_1

SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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